Evidence map›Paper›PMID 31802112›Full record

ArticleThe Biochemical journal2019

Desolvation of the substrate-binding protein TauA dictates ligand specificity for the alkanesulfonate ABC importer TauABC.

Feng Qu, Kamel ElOmari, Armin Wagner, Alfonso De Simone, Konstantinos Beis

Open access · greenAbstract read
In one paragraph

Article in The Biochemical journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Feng QuDepartment of Life Sciences, Imperial College London, South Kensington, London SW7 2AZ, U.K.
Kamel ElOmariRutherford Appleton Laboratory, Research Complex at Harwell, Oxfordshire OX11 0DE, U.K.
Armin WagnerRutherford Appleton Laboratory, Research Complex at Harwell, Oxfordshire OX11 0DE, U.K.
Alfonso De SimoneDepartment of Life Sciences, Imperial College London, South Kensington, London SW7 2AZ, U.K.
Konstantinos BeisDepartment of Life Sciences, Imperial College London, South Kensington, London SW7 2AZ, U.K.
Rutherford Appleton Laboratory · GBImperial College London · GB

Funding

Medical Research Council MR/N020103/1
6 · The paper itself

Abstract

Under limiting sulfur availability, bacteria can assimilate sulfur from alkanesulfonates. Bacteria utilize ATP-binding cassette (ABC) transporters to internalise them for further processing to release sulfur. In gram-negative bacteria the TauABC and SsuABC ensure internalization, although, these two systems have common substrates, the former has been characterized as a taurine specific system. TauA and SsuA are substrate-binding proteins (SBPs) that bind and bring the alkanesulfonates to the ABC importer for transport. Here, we have determined the crystal structure of TauA and have characterized its thermodynamic binding parameters by isothermal titration calorimetry in complex with taurine and different alkanesulfonates. Our structures revealed that the coordination of the alkanesulfonates is conserved, with the exception of Asp205 that is absent from SsuA, but the thermodynamic parameters revealed a very high enthalpic penalty cost for binding of the other alkanesulfonates relative to taurine. Our molecular dynamic simulations indicated that the different levels of hydration of the binding site contributed to the selectivity for taurine over the other alkanesulfonates. Such selectivity mechanism is very likely to be employed by other SBPs of ABC transporters.

Indexed as

AlkanesulfonatesATP-Binding Cassette TransportersBase SequenceBinding SitesCarrier ProteinsCrystallizationEscherichia coliEscherichia coli ProteinsHydrogen BondingLigandsMolecular Dynamics SimulationMutant ProteinsProtein BindingProtein DomainsProtein TransportSubstrate SpecificityAlkanesulfonatesATP-Binding Cassette TransportersCarrier ProteinsEscherichia coli ProteinsLigandsMutant ProteinsSsuA protein, E coliSulfurTauA protein, E coliTaurineABC transport proteinscrystallographymolecular dynamicsthermodynamics

Identifiers

PMID31802112
PMCPMC6906117
OpenAlexW2994143323

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.