Evidence map›Paper›PMID 31801954›Full record

ArticleNature communications2019

Predictive impact of rare genomic copy number variations in siblings of individuals with autism spectrum disorders.

L D'Abate, S Walker, R K C Yuen, K Tammimies, J A Buchanan, R W Davies, B Thiruvahindrapuram, J Wei, J Brian, S E Bryson and 12 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Family history of psychiatric conditions and development of siblings of children with autism.Autism research : official journal of the International Society for Autism Research · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Beyond Genes: Germline Disruption in the Etiology of Autism Spectrum Disorders.Journal of autism and developmental disorders · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Association between spectral electroencephalography power and autism risk and diagnosis in early development.Autism research : official journal of the International Society for Autism Research · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 10 institutions in 3 countries.

L D'AbateThe Centre for Applied Genomics, Genetics, and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.
S WalkerThe Centre for Applied Genomics, Genetics, and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.
R K C YuenThe Centre for Applied Genomics, Genetics, and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.ORCID http://orcid.org/0000-0001-7273-4968
K TammimiesThe Centre for Applied Genomics, Genetics, and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.ORCID http://orcid.org/0000-0002-8324-4697
J A BuchananThe Centre for Applied Genomics, Genetics, and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.
R W DaviesThe Centre for Applied Genomics, Genetics, and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.
B ThiruvahindrapuramThe Centre for Applied Genomics, Genetics, and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.
J WeiThe Centre for Applied Genomics, Genetics, and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.
J BrianAutism Research Centre, Bloorview Research Institute and University of Toronto, Toronto, ON, Canada.
S E BrysonAutism Research Centre, IWK Health Centre and Dalhousie University, Halifax, NS, Canada.
K DobkinsDepartment of Psychology, UC San Diego, La Jolla, CA, USA.
J HoweThe Centre for Applied Genomics, Genetics, and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada.
R LandaCenter for Autism and Related Disorders, Kennedy Krieger Institute, Baltimore, MD, USA.
J LeefAutism Research Centre, Bloorview Research Institute and University of Toronto, Toronto, ON, Canada.
D MessingerDepartment of Psychology, University of Miami, Coral Gables, FL, USA.
S OzonoffMIND Institute, Department of Psychiatry, UC Davis, Davis, CA, USA.
I M SmithAutism Research Centre, IWK Health Centre and Dalhousie University, Halifax, NS, Canada.
W L StoneDepartment of Psychology, University of Washington, Seattle, WA, USA.
Z E WarrenVanderbilt Kennedy Center Treatment and Research Institute for Autism Spectrum Disorders, Vanderbilt Kennedy Centre, Nashville, TN, USA.
G YoungMIND Institute, Department of Psychiatry, UC Davis, Davis, CA, USA.
L ZwaigenbaumAutism Research Centre, University of Alberta, Edmonton, AB, Canada.
S W SchererThe Centre for Applied Genomics, Genetics, and Genome Biology, The Hospital for Sick Children, Toronto, ON, Canada. stephen.scherer@sickkids.ca.
Hospital for Sick Children · CAUniversity of Toronto · CADalhousie University · CAUniversity of California, Davis · USJohn F. Kennedy Center for the Performing Arts · USKennedy Krieger Institute · USUniversity of Alberta · CAUniversity of California San Diego · USUniversity of Miami · USUniversity of Washington · US

Funding

Autism: Social And Communication Predictors in SiblingsR01MH059630 · NIMH · HUGO W. MOSER RES INST KENNEDY KRIEGER · PI LANDA, REBECCA JEAN · 2001 to 2016
$10.7M
Social-Emotional Development of Infants At Risk for Autism SpectrumR01HD057284 · NICHD · VANDERBILT UNIVERSITY · PI MESSINGER, DANIEL S, STONE, WENDY L. · 2008 to 2012
$3.1M
Emotion, communication, & EEG: Development & riskR01HD047417 · NICHD · UNIVERSITY OF MIAMI CORAL GABLES · PI MESSINGER, DANIEL S · 2006 to 2010
$1.5M
NICHD NIH HHS R01 HD047417NICHD NIH HHS R01 HD057284NIMH NIH HHS R01 MH059630
6 · The paper itself

Abstract

Identification of genetic biomarkers associated with autism spectrum disorders (ASDs) could improve recurrence prediction for families with a child with ASD. Here, we describe clinical microarray findings for 253 longitudinally phenotyped ASD families from the Baby Siblings Research Consortium (BSRC), encompassing 288 infant siblings. By age 3, 103 siblings (35.8%) were diagnosed with ASD and 54 (18.8%) were developing atypically. Thirteen siblings have copy number variants (CNVs) involving ASD-relevant genes: 6 with ASD, 5 atypically developing, and 2 typically developing. Within these families, an ASD-related CNV in a sibling has a positive predictive value (PPV) for ASD or atypical development of 0.83; the Simons Simplex Collection of ASD families shows similar PPVs. Polygenic risk analyses suggest that common genetic variants may also contribute to ASD. CNV findings would have been pre-symptomatically predictive of ASD or atypical development in 11 (7%) of the 157 BSRC siblings who were eventually diagnosed clinically.

Indexed as

DNA Copy Number VariationsSiblingsAutism Spectrum DisorderChild, PreschoolFamily HealthFemaleGenetic Predisposition to DiseaseGenome, HumanGenomicsHumansMalePedigreePhenotypeRisk Factors

Identifiers

PMID31801954
PMCPMC6892938
OpenAlexW2994386773

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.