Evidence map›Paper›PMID 31801692›Full record

ArticleArchives of biochemistry and biophysics2020

Novel insights into oxidation of fatty acids and fatty alcohols by cytochrome P450 monooxygenase CYP4B1.

Florian A Thesseling, Michael C Hutter, Constanze Wiek, John P Kowalski, Allan E Rettie, Marco Girhard

Open access · greenAbstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Spotlight on CYP4B1.International journal of molecular sciences · 2023
    Review
  8. Article
  9. Advances in the Pharmacological Activities and Effects of Perilla Ketone and Isoegomaketone.Evidence-based complementary and alternative medicine : eCAM · 2022
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Florian A ThesselingInstitute of Biochemistry, Heinrich-Heine University, 40225, Düsseldorf, Germany. Electronic address: florian.thesseling@hhu.de.
Michael C HutterCenter for Bioinformatics, Saarland University, 66123, Saarbrücken, Germany. Electronic address: michael.hutter@bioinformatik.uni-saarland.de.
Constanze WiekDepartment of Otorhinolaryngology and Head/Neck Surgery, Heinrich-Heine University, 40225, Düsseldorf, Germany. Electronic address: constanze.wiek@med.uni-duesseldorf.de.
John P KowalskiDepartment of Medicinal Chemistry, School of Pharmacy, University of Washington, Seattle, WA, 98195, USA. Electronic address: kowalj@uw.edu.
Allan E RettieDepartment of Medicinal Chemistry, School of Pharmacy, University of Washington, Seattle, WA, 98195, USA. Electronic address: rettie@uw.edu.
Marco GirhardInstitute of Biochemistry, Heinrich-Heine University, 40225, Düsseldorf, Germany. Electronic address: marco.girhard@hhu.de.
Heinrich Heine University Düsseldorf · DEUniversity of Washington · USSaarland University · DE

Funding

Pharmacological Sciences SupplementT32GM007750 · NIGMS · UNIVERSITY OF WASHINGTON · PI ATKINS, WILLIAM M · 1985 to 2023
$12.6M
MECHANISMS OF P450 DEPENDENT DESATURATIONR01GM049054 · NIGMS · UNIVERSITY OF WASHINGTON · PI RETTIE, ALLAN EDWARD · 1994 to 2010
$2.9M
NIGMS NIH HHS R01 GM049054NIGMS NIH HHS T32 GM007750
6 · The paper itself

Abstract

CYP4B1 is an enigmatic mammalian cytochrome P450 monooxygenase acting at the interface between xenobiotic and endobiotic metabolism. A prominent CYP4B1 substrate is the furan pro-toxin 4-ipomeanol (IPO). Our recent investigation on metabolism of IPO related compounds that maintain the furan functionality of IPO while replacing its alcohol group with alkyl chains of varying structure and length revealed that, in addition to cytotoxic reactive metabolite formation (resulting from furan activation) non-cytotoxic ω-hydroxylation at the alkyl chain can also occur. We hypothesized that substrate reorientations may happen in the active site of CYP4B1. These findings prompted us to re-investigate oxidation of unsaturated fatty acids and fatty alcohols with C9-C16 carbon chain length by CYP4B1. Strikingly, we found that besides the previously reported ω- and ω-1-hydroxylations, CYP4B1 is also capable of α-, β-, γ-, and δ-fatty acid hydroxylation. In contrast, fatty alcohols of the same chain length are exclusively hydroxylated at ω, ω-1, and ω-2 positions. Docking results for the corresponding CYP4B1-substrate complexes revealed that fatty acids can adopt U-shaped bonding conformations, such that carbon atoms in both arms may approach the heme-iron. Quantum chemical estimates of activation energies of the hydrogen radical abstraction by the reactive compound 1 as well as electron densities of the substrate orbitals led to the conclusion that fatty acid and fatty alcohol oxidations by CYP4B1 are kinetically controlled reactions.

Indexed as

Aryl Hydrocarbon HydroxylasesCytochromes b5Fatty AcidsFatty AlcoholsHumansKineticsMolecular Docking SimulationOxidation-ReductionProtein ConformationAryl Hydrocarbon Hydroxylasescytochrome P-450 CYP4B1Cytochromes b5Fatty AcidsFatty AlcoholsBiocatalysisCYP4B1Cytochrome P450 monooxygenaseFatty acidFatty alcohol

Identifiers

PMID31801692
PMCPMC6957734
OpenAlexW2990556344

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.