ArticleGenome biology2019
Dashing: fast and accurate genomic distances with HyperLogLog.
Article in Genome biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.
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Who cites it
65 citing papers in PubMed.
- DipSkmer: Reference-free population genomics with diploid genome skims.bioRxiv : the preprint server for biology · 2026Article
- HYMET: a hybrid metagenomic pipeline for accurate and efficient taxonomic classification.GigaScience · 2026Article
- Towards accurate artificial intelligence models for strain-level phage-host prediction.Briefings in bioinformatics · 2026Article
- PBIP: a deep learning framework for predicting phage-bacterium interactions at the strain level.Briefings in bioinformatics · 2025Article
- SKiM: accurately classifying metagenomic ONT reads in limited memory.Bioinformatics (Oxford, England) · 2025Article
- Formal verification of bioinformatics software using model checking and theorem proving.Briefings in bioinformatics · 2025Article
- skDER and CiDDER: two scalable approaches for microbial genome dereplication.Microbial genomics · 2025Article
- RabbitSketch: a high-performance sketching library for genome analysis.Bioinformatics (Oxford, England) · 2025Article
- CoverM: read alignment statistics for metagenomics.Bioinformatics (Oxford, England) · 2025Article
- Fractional hitting sets for efficient multiset sketching.Algorithms for molecular biology : AMB · 2025Article
- Taming large-scale genomic analyses via sparsified genomics.Nature communications · 2025Article
- A survey of k-mer methods and applications in bioinformatics.Computational and structural biotechnology journal · 2024Review
- GSearch: ultra-fast and scalable genome search by combining K-mer hashing with hierarchical navigable small world graphs.Nucleic acids research · 2024Article
- SegVir: Reconstruction of Complete Segmented RNA Viral Genomes from Metatranscriptomes.Molecular biology and evolution · 2024Article
- Fast and space-efficient taxonomic classification of long reads with hierarchical interleaved XOR filters.Genome research · 2024Article
- KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes.PLoS genetics · 2024Article
- Article
- Isolation and encapsulation of bacteriophage with chitosan nanoparticles for biocontrol of multidrug-resistant methicillin-resistant Staphylococcus aureus isolated from broiler poultry farms.Scientific reports · 2024Article
- The plasmidome associated with Gram-negative bloodstream infections: A large-scale observational study using complete plasmid assemblies.Nature communications · 2024Article
- Convergence of gut phage communities but not bacterial communities following wild mouse bacteriophage transplantation into captive house mice.The ISME journal · 2024Article
5 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
Abstract
Dashing is a fast and accurate software tool for estimating similarities of genomes or sequencing datasets. It uses the HyperLogLog sketch together with cardinality estimation methods that are specialized for set unions and intersections. Dashing summarizes genomes more rapidly than previous MinHash-based methods while providing greater accuracy across a wide range of input sizes and sketch sizes. It can sketch and calculate pairwise distances for over 87K genomes in 6 minutes. Dashing is open source and available at https://github.com/dnbaker/dashing.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.