Evidence map›Paper›PMID 31800451›Full record

ArticleJournal of occupational and environmental medicine2019

Machine Learning Approach for Predicting Past Environmental Exposures From Molecular Profiling of Post-Exposure Human Serum Samples.

Atif Khan, Thomas H Thatcher, Collynn F Woeller, Patricia J Sime, Richard P Phipps, Philip K Hopke, Mark J Utell, Pamela L Krahl, Timothy M Mallon, Juilee Thakar

Open access · bronzeAbstract read
In one paragraph

Article in Journal of occupational and environmental medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Atif KhanDepartments of Microbiology and Immunology and Biostatistics and Computational Biology (Mr Khan, Ms Thakar); Department of Environmental Medicine (Mr Woeller); Departments of Medicine, Environmental Medicine, and Microbiology and Immunology (Mr Phipps); Department of Public Health Sciences (Mr Hopke); Center for Air Resources Engineering and Science, Clarkson University, Potsdam (Mr Hopke); Departments of Medicine and Environmental Medicine (Mr Utell), University of Rochester Medical Center, Rochester, New York; Division of Pulmonary Diseases and Critical Care Medicine, Virginia Commonwealth University, Richmond, Virginia (Mr Thatcher, Ms Sime); Department of Preventive Medicine and Biostatistics, Uniformed Services University of the Health Sciences, Bethesda, Maryland (Ms Krahl, Mr Mallon).
Thomas H Thatcher
Collynn F Woeller
Patricia J Sime
Richard P Phipps
Philip K Hopke
Mark J Utell
Pamela L Krahl
Timothy M Mallon
Juilee Thakar
Phipps Houses · USUniversity of Rochester Medical Center · US

Funding

VISUAL INDICES OF NEUROTOXICITYP30ES001247 · NIEHS · UNIVERSITY OF ROCHESTER · PI Sally W Thurston · 1985 to 2026
$42.8M
MULTIDISCIPLINARY TRAINING IN PULMONARY RESEARCHT32HL066988 · NHLBI · UNIVERSITY OF ROCHESTER · PI GEORAS, STEVE N, O'REILLY, MICHAEL A · 2001 to 2021
$8.1M
Plasma Exosomes in ART-sustained HIV-infected Persons that Abuse TobaccoR21AI136668 · NIAID · UNIVERSITY OF ROCHESTER · PI THAKAR, JUILEE · 2018 to 2019
$423k
NHLBI NIH HHS T32 HL066988NIAID NIH HHS R21 AI136668NIEHS NIH HHS P30 ES001247
6 · The paper itself

Abstract

objectiveTo develop an approach for a retrospective analysis of post-exposure serum samples using diverse molecular profiles.

methodsThe 236 molecular profiles from 800 de-identified human serum samples from the Department of Defense Serum Repository were classified as smokers or non-smokers based on direct measurement of serum cotinine levels. A machine-learning pipeline was used to classify smokers and non-smokers from their molecular profiles.

resultsThe refined supervised support vector machines with recursive feature elimination predicted smokers and non-smokers with 78% accuracy on the independent held-out set. Several of the identified classifiers of smoking status have previously been reported and four additional miRNAs were validated with experimental tobacco smoke exposure in mice, supporting the computational approach.

conclusionsWe developed and validated a pipeline that shows retrospective analysis of post-exposure serum samples can identify environmental exposures.

Indexed as

Machine LearningAdolescentAdultAge FactorsAnimalsBiomarkersCotinineDisease Models, AnimalEnvironmental ExposureFemaleHumansMaleMice, Inbred C57BLSex FactorsSmokingSupport Vector MachineBiomarkersCotinineTobacco Smoke Pollution

Identifiers

PMID31800451
PMCPMC6897314
OpenAlexW2991783617

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.