Evidence map›Paper›PMID 31800116›Full record

ReviewProtein science : a publication of the Protein Society2020

Iterative annealing mechanism explains the functions of the GroEL and RNA chaperones.

D Thirumalai, George H Lorimer, Changbong Hyeon

Abstract readReview
In one paragraph

Review in Protein science : a publication of the Protein Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Bioactive structures for inhibitors ofFuture medicinal chemistry · 2025
    Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Structural basis of substrate progression through the bacterial chaperonin cycle.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Article
  11. G-quadruplexes rescuing protein folding.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Frontiers in molecular biosciences · 2023
    Review
  13. Dynamics of chromosome organization in a minimal bacterial cell.Frontiers in cell and developmental biology · 2023
    Article
  14. Article
  15. Moderate activity of RNA chaperone maximizes the yield of self-spliced pre-RNA in vivo.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Review
  17. Review
  18. A diminished hydrophobic effect inside the GroEL/ES cavity contributes to protein substrate destabilization.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

D ThirumalaiDepartment of Chemistry, The University of Texas at Austin, Austin, Texas.ORCID 0000-0003-1801-5924
George H LorimerBiophysics Program, Institute for Physical Science and Technology, University of Maryland, College Park, Maryland.
Changbong HyeonKorea Institute for Advanced Study, Seoul, South Korea.ORCID 0000-0002-4844-7237

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular chaperones are ATP-consuming machines, which facilitate the folding of proteins and RNA molecules that are kinetically trapped in misfolded states. Unassisted folding occurs by the kinetic partitioning mechanism according to which folding to the native state, with low probability as well as misfolding to one of the many metastable states, with high probability, occur rapidly. GroEL is an all-purpose stochastic machine that assists misfolded substrate proteins to fold. The RNA chaperones such as CYT-19, which are ATP-consuming enzymes, help the folding of ribozymes that get trapped in metastable states for long times. GroEL does not interact with the folded proteins but CYT-19 disrupts both the folded and misfolded ribozymes. The structures of GroEL and RNA chaperones are strikingly different. Despite these differences, the iterative annealing mechanism (IAM) quantitatively explains all the available experimental data for assisted folding of proteins and ribozymes. Driven by ATP binding and hydrolysis and GroES binding, GroEL undergoes a catalytic cycle during which it samples three allosteric states, T (apo), R (ATP bound), and R

Indexed as

Allosteric RegulationDEAD-box RNA HelicasesModels, MolecularMolecular ChaperonesProtein ConformationProtein FoldingRNARNA, CatalyticStochastic ProcessesDEAD-box RNA HelicasesMolecular ChaperonesRNARNA, CatalyticGroEL-GroES machineryIAM as unified theorykinetic partitioning mechanismnonequilibriumoptimization of product of rate and native yieldRNA chaperones

Identifiers

PMID31800116
PMCPMC6954723

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.