Evidence map›Paper›PMID 31799930›Full record

ArticleeLife2019

Exchange of water for sterol underlies sterol egress from a StARkin domain.

George Khelashvili, Neha Chauhan, Kalpana Pandey, David Eliezer, Anant K Menon

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Cholesterol Transport to the Endoplasmic Reticulum.Cold Spring Harbor perspectives in biology · 2023
    Review
  6. Article
  7. Article
  8. Article
  9. Mechanisms of nonvesicular lipid transport.The Journal of cell biology · 2021
    Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

George KhelashviliDepartment of Physiology and Biophysics, Weill Cornell Medical College, New York, United States.ORCID 0000-0001-7235-8579
Neha Chauhan *Department of Biochemistry, Weill Cornell Medical College, New York, United States.ORCID 0000-0003-1497-3359
Kalpana Pandey *Department of Biochemistry, Weill Cornell Medical College, New York, United States.
David EliezerDepartment of Biochemistry, Weill Cornell Medical College, New York, United States.ORCID 0000-0002-1311-7537
Anant K MenonDepartment of Biochemistry, Weill Cornell Medical College, New York, United States.ORCID 0000-0001-6924-2698
Cornell University · US

Funding

Structure and Function of Alpha-SynucleinR37AG019391 · NIA · WEILL MEDICAL COLL OF CORNELL UNIV · PI ELIEZER, DAVID · 2010 to 2019
$3.4M
NIA NIH HHS R37 AG019391NIH HHS R37AG019391
6 · The paper itself

Abstract

Previously we identified Lam/GramD1 proteins, a family of endoplasmic reticulum membrane proteins with sterol-binding StARkin domains that are implicated in intracellular sterol homeostasis. Here, we show how these proteins exchange sterol molecules with membranes. An aperture at one end of the StARkin domain enables sterol to enter/exit the binding pocket. Strikingly, the wall of the pocket is longitudinally fractured, exposing bound sterol to solvent. Large-scale atomistic molecular dynamics simulations reveal that sterol egress involves widening of the fracture, penetration of water into the cavity, and consequent destabilization of the bound sterol. The simulations identify polar residues along the fracture that are important for sterol release. Their replacement with alanine affects the ability of the StARkin domain to bind sterol, catalyze inter-vesicular sterol exchange and alleviate the nystatin-sensitivity of

Indexed as

AntiportersDNA-Binding ProteinsEndoplasmic ReticulumExosome Multienzyme Ribonuclease ComplexHomeostasisMembrane ProteinsMolecular Dynamics SimulationNuclear ProteinsProtein ConformationProtein DomainsRNA-Binding ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSterolsWaterAntiportersDNA-Binding ProteinsExosome Multienzyme Ribonuclease ComplexLRP1 protein, S cerevisiaeLTC1 protein, S cerevisiaeMembrane ProteinsNuclear ProteinsRNA-Binding ProteinsSaccharomyces cerevisiae ProteinsSterolsWaterbiochemistrychemical biologylipid transportmolecular dynamicsS. cerevisiaeStART domain

Identifiers

PMID31799930
PMCPMC6940019
OpenAlexW2991704999

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.