Evidence map›Paper›PMID 31799778›Full record

ArticlePlant biotechnology journal2020

Overexpression of a developing xylem cDNA library in transgenic poplar generates high mutation rate specific to wood formation.

James Rauschendorfer, Yordan Yordanov, Petre Dobrev, Radomira Vankova, Robert Sykes, Carsten Külheim, Victor Busov

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

James RauschendorferCollege of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI, USA.ORCID 0000-0002-1360-9419
Yordan YordanovDepartment of Biology, Eastern Illinois University, Charleston, IL, USA.ORCID 0000-0002-9371-2095
Petre DobrevInstitute of Experimental Botany, Czech Academy of Sciences, Prague, Czech Republic.ORCID 0000-0001-7412-6982
Radomira VankovaInstitute of Experimental Botany, Czech Academy of Sciences, Prague, Czech Republic.ORCID 0000-0001-9101-8844
Robert SykesNuclear Materials Science, Los Alamos National Laboratory, Los Alamos, NM, USA.ORCID 0000-0002-2061-6625
Carsten KülheimCollege of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI, USA.ORCID 0000-0002-0798-3324
Victor BusovCollege of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI, USA.ORCID 0000-0003-2344-1581
Michigan Technological University · USCzech Academy of Sciences · CZEastern Illinois University · USLos Alamos National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We investigated feasibility of the Full-length complementary DNA OvereXpression (FOX) system as a mutagenesis approach in poplar, using developing xylem tissue. The main goal was to assess the overall mutation rate and if the system will increase instances of mutants affected in traits linked to the xylem tissue. Indeed, we found a high mutation rate of 17.7%, whereas 80% of all mutants were significantly affected in cellulose, lignin and/or hemicellulose. Cell wall biosynthesis is a major process occurring during xylem development. Enrichment of mutants affected in cell wall composition suggests that the tissue source for the FOX library influenced the occurrence of mutants affected in a trait linked to this tissue. Additionally, we found that FLcDNAs from mutants affected in cell wall composition were homologous to genes known to be involved in cell wall biosynthesis and most recovered FLcDNAs corresponded to genes whose native expression was highest in xylem. We characterized in detail a mutant line with increased diameter. The phenotype was caused by a poplar homolog of LONELY GUY 1 (LOG1), which encodes an enzyme in cytokinin biosynthesis and significantly increased xylem proliferation. The causative role of LOG1 in the observed phenotype was further reaffirmed by elevated cytokinin concentration in the mutant and recapitulation overexpression experiment wherein multiple independent lines phenocopied the original FOX mutant. Our experiments show that the FOX approach can be efficiently used for gene discovery and molecular interrogation of traits specific to woody perennial growth and development.

Indexed as

PopulusWoodCell WallGene Expression Regulation, PlantGene LibraryLigninMutation RatePlant ProteinsXylemLigninPlant Proteinsfox hunting systemgeneticspoplar

Identifiers

PMID31799778
PMCPMC7207001
OpenAlexW3166082077

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.