Evidence map›Paper›PMID 31799629›Full record

ArticleNucleic acids research2020

Ribosomal protein gene RPL9 variants can differentially impair ribosome function and cellular metabolism.

Marco Lezzerini, Marianna Penzo, Marie-Françoise O'Donohue, Carolina Marques Dos Santos Vieira, Manon Saby, Hyung L Elfrink, Illja J Diets, Anne-Marie Hesse, Yohann Couté, Marc Gastou and 18 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 54 citations in OpenAlex.

  1. Proteogenomic Analysis of Coronary Artery Calcification in Human Populations.Arteriosclerosis, thrombosis, and vascular biology · 2026
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  15. Increasing Complexity of Ribosomes and Their Biogenesis.International journal of molecular sciences · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 13 institutions in 6 countries.

Marco LezzeriniAmsterdam UMC, University of Amsterdam, Laboratory Genetic Metabolic Diseases, Amsterdam Gastroenterology and Metabolism, Meibergdreef 9, 1105 AZ Amsterdam, The Netherlands.
Marianna PenzoLaboratorio di Patologia Clinica, Dipartimento di Medicina Specialistica, Diagnostica e Sperimentale and Centro di Ricerca Biomedica Applicata (CRBA), Policlinico Universitario di S. Orsola, Università di Bologna,Via Massarenti 9, 40138 Bologna, Italy.
Marie-Françoise O'DonohueLBME, Centre de Biologie Intégrative (CBI), Université de Toulouse, CNRS, UPS, 31000 Toulouse, France.
Carolina Marques Dos Santos VieiraDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD, USA.
Manon SabyINSERM UMR S1134, F-75015, Paris, France.
Hyung L ElfrinkAmsterdam UMC, University of Amsterdam, Laboratory Genetic Metabolic Diseases, Amsterdam Gastroenterology and Metabolism, Meibergdreef 9, 1105 AZ Amsterdam, The Netherlands.
Illja J DietsDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Anne-Marie HesseUniversity Grenoble Alpes, CEA, INSERM, IRIG, BGE, F-38000 Grenoble, France.
Yohann CoutéUniversity Grenoble Alpes, CEA, INSERM, IRIG, BGE, F-38000 Grenoble, France.
Marc GastouParis University, Paris, France.
Alexandra Nin-VelezDepartment of Comparative Biology and Center for Cancer Research, Purdue University, West Lafayette, IN 47907, USA.
Peter G J NikkelsDepartment of Pathology, University Medical Center Utrecht, 3584 CX Utrecht, The Netherlands.
Alexandra N OlsonDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD, USA.
Evelien Zonneveld-HuijssoonDepartment of Genetics, University Medical Center Utrecht, 3508 AB Utrecht, The Netherlands.
Marjolijn C J JongmansDepartment of Genetics, University Medical Center Utrecht, 3508 AB Utrecht, The Netherlands.
GuangJun ZhangDepartment of Comparative Biology and Center for Cancer Research, Purdue University, West Lafayette, IN 47907, USA.
Michel van WeeghelAmsterdam UMC, University of Amsterdam, Laboratory Genetic Metabolic Diseases, Core Facility Metabolomics, Amsterdam Gastroenterology and Metabolism, Meibergdreef 9, 1105 AZ Amsterdam, The Netherlands.
Riekelt H HoutkooperAmsterdam UMC, University of Amsterdam, Laboratory Genetic Metabolic Diseases, Amsterdam Gastroenterology and Metabolism, Meibergdreef 9, 1105 AZ Amsterdam, The Netherlands.
Marcin W WlodarskiDepartment of Pediatrics and Adolescent Medicine, Division of Pediatric Hematology and Oncology, Medical Center, Faculty of Medicine, University of Freiburg, D-79106 Freiburg, Germany.
Roland P KuiperDepartment of Genetics, University Medical Center Utrecht, 3508 AB Utrecht, The Netherlands.
Marc B BieringsPrincess Maxima Center for Pediatric Oncology and Utrecht University Children's Hospital, Utrecht, The Netherlands.
Jutte van der Werff Ten BoschDepartment of Pediatrics, Universitair Ziekenhuis Brussel, Brussels, Belgium.
Thierry LeblancPediatric Hematology/Oncology Service, Robert Debré Hospital, F-75019 Paris, France.
Lorenzo MontanaroLaboratorio di Patologia Clinica, Dipartimento di Medicina Specialistica, Diagnostica e Sperimentale and Centro di Ricerca Biomedica Applicata (CRBA), Policlinico Universitario di S. Orsola, Università di Bologna,Via Massarenti 9, 40138 Bologna, Italy.
Jonathan D DinmanDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD, USA.
Lydie Da CostaINSERM UMR S1134, F-75015, Paris, France.
Pierre-Emmanuel GleizesLBME, Centre de Biologie Intégrative (CBI), Université de Toulouse, CNRS, UPS, 31000 Toulouse, France.
Alyson W MacInnesAmsterdam UMC, University of Amsterdam, Laboratory Genetic Metabolic Diseases, Amsterdam Gastroenterology and Metabolism, Meibergdreef 9, 1105 AZ Amsterdam, The Netherlands.
Amsterdam University Medical Centers · NLInserm · FRUniversity of Maryland, College Park · USCentre National de la Recherche Scientifique · FRPurdue University West Lafayette · USUniversity Medical Center Utrecht · NLUniversity of Bologna · ITUtrecht University · NLHôpital Robert-Debré · FRRadboud University Nijmegen · NLSt. Jude Children's Research Hospital · USUniversitair Ziekenhuis Brussel · BEUniversity Medical Center Groningen · NL

Funding

X-linked Dyskeratosis Congenita and Ribosomal FrameshiftingR01HL119439 · NHLBI · UNIV OF MARYLAND, COLLEGE PARK · PI DINMAN, JONATHAN D, RUGGERO, DAVIDE · 2014 to 2017
$2.8M
NHLBI NIH HHS R01 HL119439
6 · The paper itself

Abstract

Variants in ribosomal protein (RP) genes drive Diamond-Blackfan anemia (DBA), a bone marrow failure syndrome that can also predispose individuals to cancer. Inherited and sporadic RP gene variants are also linked to a variety of phenotypes, including malignancy, in individuals with no anemia. Here we report an individual diagnosed with DBA carrying a variant in the 5'UTR of RPL9 (uL6). Additionally, we report two individuals from a family with multiple cancer incidences carrying a RPL9 missense variant. Analysis of cells from these individuals reveals that despite the variants both driving pre-rRNA processing defects and 80S monosome reduction, the downstream effects are remarkably different. Cells carrying the 5'UTR variant stabilize TP53 and impair the growth and differentiation of erythroid cells. In contrast, ribosomes incorporating the missense variant erroneously read through UAG and UGA stop codons of mRNAs. Metabolic profiles of cells carrying the 5'UTR variant reveal an increased metabolism of amino acids and a switch from glycolysis to gluconeogenesis while those of cells carrying the missense variant reveal a depletion of nucleotide pools. These findings indicate that variants in the same RP gene can drive similar ribosome biogenesis defects yet still have markedly different downstream consequences and clinical impacts.

Indexed as

5' Untranslated RegionsAdolescentAdultAnemia, Diamond-BlackfanCarcinoma, Squamous CellChildErythroid CellsExome SequencingFemaleHumansMaleMutationRibosomal ProteinsRibosomesRNA, MessengerRNA Precursors5' Untranslated Regionsribosomal protein L9Ribosomal ProteinsRNA, MessengerRNA Precursors

Identifiers

PMID31799629
PMCPMC6954397
OpenAlexW2992951388

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.