Evidence map›Paper›PMID 31799434›Full record

ArticleCommunications biology2019

A TonB-dependent receptor constitutes the outer membrane transport system for a lignin-derived aromatic compound.

Masaya Fujita, Kosuke Mori, Hirofumi Hara, Shojiro Hishiyama, Naofumi Kamimura, Eiji Masai

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Communications biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 84 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Masaya Fujita1Department of Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata Japan.ORCID 0000-0003-2614-7222
Kosuke Mori1Department of Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata Japan.
Hirofumi Hara2Department of Chemical Process Engineering, Malaysia-Japan International Institute of Technology, Universiti Teknologi Malaysia, Kuala Lumpur, Malaysia.
Shojiro Hishiyama3Forestry and Forest Products Research Institute, Tsukuba, Ibaraki Japan.
Naofumi Kamimura1Department of Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata Japan.ORCID 0000-0002-8792-1675
Eiji Masai1Department of Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata Japan.ORCID 0000-0001-9194-7483
Nagaoka University · JPForestry and Forest Products Research Institute · JPUniversity of Kuala Lumpur · MY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TonB-dependent receptors (TBDRs) mediate substrate-specific transport across the outer membrane, utilizing energy derived from the proton motive force transmitted from the TonB-ExbB-ExbD complex located in the inner membrane (TonB system). Although a number of TonB systems involved in the uptake of siderophores, vitamin B12 and saccharides have been identified, their involvement in the uptake and catabolism of aromatic compounds was previously unknown. Here, we show that the outer membrane transport of a biphenyl compound derived from lignin is mediated by the TonB system in a Gram-negative bacterium capable of degrading lignin-derived aromatic compounds,

Indexed as

Applied microbiologyBacterial genetics

Identifiers

PMID31799434
PMCPMC6874591
OpenAlexW2989630291

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.