Evidence map›Paper›PMID 31798572›Full record

ArticleFrontiers in immunology2019

Standardized IMGT® Nomenclature of Salmonidae IGH Genes, the Paradigm of Atlantic Salmon and Rainbow Trout: From Genomics to Repertoires.

Susana Magadan, Aleksei Krasnov, Saida Hadi-Saljoqi, Sergey Afanasyev, Stanislas Mondot, Delphine Lallias, Rosario Castro, Irene Salinas, Oriol Sunyer, John Hansen and 3 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

  1. IMGTAntibodies (Basel, Switzerland) · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. IMGTBiomolecules · 2022
    Article
  8. Article
  9. Article
  10. Mucosal immunoglobulins of teleost fish: A decade of advances.Developmental and comparative immunology · 2021
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Deimination Protein Profiles inFrontiers in immunology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 9 institutions in 6 countries.

Susana MagadanImmunology Laboratory, Biomedical Research Center, University of Vigo, Vigo, Spain.
Aleksei KrasnovNofima AS, Norwegian Institute of Food, Fisheries and Aquaculture Research, Tromsø, Norway.
Saida Hadi-SaljoqiIMGT®, The International ImMunoGeneTics Information System® (IMGT), Laboratoire d'ImmunoGénétique Moléculaire (LIGM), Institut de Génétique Humaine (IGH), CNRS, University of Montpellier, Montpellier, France.
Sergey AfanasyevSechenov Institute of Evolutionary Physiology and Biochemistry, Saint Petersburg, Russia.
Stanislas MondotMICALIS, Institut National de la Recherche Agronomique, Université Paris-Saclay, Jouy-en-Josas, France.
Delphine LalliasGénétique Animale et Biologie Intégrative (GABI), INRA, AgroParisTech, Université Paris-Saclay, Jouy-en-Josas, France.
Rosario CastroVirologie et Immunologie Moléculaires (VIM), Institut National de la Recherche Agronomique (INRA), Université Paris-Saclay, Jouy-en-Josas, France.
Irene SalinasDepartment of Biology, Center of Evolutionary and Theoretical Immunology, University of New Mexico, Albuquerque, NM, United States.
Oriol SunyerPathobiology Department, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, United States.
John HansenWestern Fisheries Research Center, U.S. Geological Survey, Seattle, WA, United States.
Ben F KoopDepartment of Biology, University of Victoria, Victoria, BC, Canada.
Marie-Paule LefrancIMGT®, The International ImMunoGeneTics Information System® (IMGT), Laboratoire d'ImmunoGénétique Moléculaire (LIGM), Institut de Génétique Humaine (IGH), CNRS, University of Montpellier, Montpellier, France.
Pierre BoudinotVirologie et Immunologie Moléculaires (VIM), Institut National de la Recherche Agronomique (INRA), Université Paris-Saclay, Jouy-en-Josas, France.
Université Paris-Saclay · FRCentre National de la Recherche Scientifique · FRUniversity of New Mexico · USAgroParisTech · FRInstitute of Evolutionary Physiology and Biochemistry · RUNofima · NOUnited States Geological Survey · USUniversity of Pennsylvania · USUniversity of Victoria · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In teleost fish as in mammals, humoral adaptive immunity is based on B lymphocytes expressing highly diverse immunoglobulins (IG). During B cell differentiation, IG loci are subjected to genomic rearrangements of V, D, and J genes, producing a unique antigen receptor expressed on the surface of each lymphocyte. During the course of an immune response to infections or immunizations, B cell clones specific of epitopes from the immunogen are expanded and activated, leading to production of specific antibodies. Among teleost fish, salmonids comprise key species for aquaculture. Rainbow trout (

Indexed as

Genes, Immunoglobulin Heavy ChainMolecular Sequence AnnotationAnimalsComputational BiologyGene Expression RegulationGenetic VariationHigh-Throughput Nucleotide SequencingHumansOncorhynchus mykissPhylogenySalmo salarV(D)J Recombinationantibody repertoirecomparative immunologyimmunoglobulinsalmonid fishVDJ annotation

Identifiers

PMID31798572
PMCPMC6866254
OpenAlexW2981955703

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.