Evidence map›Paper›PMID 31797930›Full record

ArticleNature communications2019

Synthetic chimeric nucleases function for efficient genome editing.

R M Liu, L L Liang, E Freed, H Chang, E Oh, Z Y Liu, A Garst, C A Eckert, R T Gill

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
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  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. UnlockingGenes · 2021
    Article
  14. Article
  15. A more efficient CRISPR-Cas12a variant derived fromMolecular therapy. Nucleic acids · 2021
    Article
  16. Review
  17. The Model SystemLife (Basel, Switzerland) · 2020
    Review
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

R M LiuRenewable and Sustainable Energy Institute (RASEI), University of Colorado, Boulder, CO, USA.
L L LiangRenewable and Sustainable Energy Institute (RASEI), University of Colorado, Boulder, CO, USA.
E FreedRenewable and Sustainable Energy Institute (RASEI), University of Colorado, Boulder, CO, USA.
H ChangDepartment of Biochemistry, University of Colorado, Boulder, CO, USA.
E OhRenewable and Sustainable Energy Institute (RASEI), University of Colorado, Boulder, CO, USA.
Z Y LiuDepartment of Biochemistry, University of Colorado, Boulder, CO, USA.
A GarstInscripta, Inc., Boulder, CO, USA.
C A EckertRenewable and Sustainable Energy Institute (RASEI), University of Colorado, Boulder, CO, USA.ORCID http://orcid.org/0000-0003-4201-2926
R T GillRenewable and Sustainable Energy Institute (RASEI), University of Colorado, Boulder, CO, USA. rtg@biosustain.dtu.dk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CRISPR-Cas systems have revolutionized genome editing across a broad range of biotechnological endeavors. Many CRISPR-Cas nucleases have been identified and engineered for improved capabilities. Given the modular structure of such enzymes, we hypothesized that engineering chimeric sequences would generate non-natural variants that span the kinetic parameter landscape, and thus provide for the rapid selection of nucleases fit for a particular editing system. Here, we design a chimeric Cas12a-type library with approximately 560 synthetic chimeras, and select several functional variants. We demonstrate that certain nuclease domains can be recombined across distantly related nuclease templates to produce variants that function in bacteria, yeast, and human cell lines. We further characterize selected chimeric nucleases and find that they have different protospacer adjacent motif (PAM) preferences and the M44 chimera has higher specificity relative to wild-type (WT) sequences. This demonstration opens up the possibility of generating nuclease sequences with implications across biotechnology.

Indexed as

CRISPR-Cas SystemsBacteriaBiotechnologyEndonucleasesGene EditingGene LibraryHEK293 CellsHumansMutationRecombinant Fusion ProteinsReproducibility of ResultsYeastsEndonucleasesRecombinant Fusion Proteins

Identifiers

PMID31797930
PMCPMC6892893

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.