Evidence map›Paper›PMID 31797640›Full record

ArticlePacific Symposium on Biocomputing. Pacific Symposium on Biocomputing2020

Feature Selection and Dimension Reduction of Social Autism Data.

Peter Washington, Kelley Marie Paskov, Haik Kalantarian, Nathaniel Stockham, Catalin Voss, Aaron Kline, Ritik Patnaik, Brianna Chrisman, Maya Varma, Qandeel Tariq and 4 more

Abstract read
In one paragraph

Article in Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Challenges in the Differential Classification of Individual Diagnoses from Co-Occurring Autism and ADHD Using Survey Data.... IEEE-EMBS International Conference on Biomedical and Health Informatics. IEEE-EMBS International Conference on Biomedical and Health Informatics · 2024
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Selection of trustworthy crowd workers for telemedical diagnosis of pediatric autism spectrum disorder.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2021
    Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Peter WashingtonDepartment of Bioengineering, Stanford University, Palo Alto, CA, USA.
Kelley Marie Paskov
Haik Kalantarian
Nathaniel Stockham
Catalin Voss
Aaron Kline
Ritik Patnaik
Brianna Chrisman
Maya Varma
Qandeel Tariq
Kaitlyn Dunlap
Jessey Schwartz
Nick Haber
Dennis P Wall

Funding

POSTDOCTORAL TRAINING IN MEDICAL INFORMATION SCIENCEST15LM007033 · NLM · STANFORD UNIVERSITY · PI SYLVIA KATINA PLEVRITIS · 1985 to 2026
$25.5M
Creating an artificial intelligence therapy-to-data feedback loop for child developmental healthcareR01LM013083 · NLM · STANFORD UNIVERSITY · PI WALL, DENNIS PAUL · 2019 to 2022
$2.6M
Biomedical Data Science Graduate Training at StanfordT32LM012409 · NLM · STANFORD UNIVERSITY · PI PLEVRITIS, SYLVIA KATINA · 2016 to 2020
$1.5M
QuBBD: Wearable artificial intelligence for bid data-driven healthcare in child development R01EB025025 · NIBIB · STANFORD UNIVERSITY · PI WALL, DENNIS PAUL · 2017 to 2019
$1.1M
Evaluation of machine learning to mobilize detection and therapy of developmental delay in childrenR21HD091500 · NICHD · STANFORD UNIVERSITY · PI WALL, DENNIS PAUL · 2017 to 2018
$432k
NIBIB NIH HHS R01 EB025025NICHD NIH HHS R21 HD091500NLM NIH HHS R01 LM013083NLM NIH HHS T15 LM007033NLM NIH HHS T32 LM012409
6 · The paper itself

Abstract

Autism Spectrum Disorder (ASD) is a complex neuropsychiatric condition with a highly heterogeneous phenotype. Following the work of Duda et al., which uses a reduced feature set from the Social Responsiveness Scale, Second Edition (SRS) to distinguish ASD from ADHD, we performed item-level question selection on answers to the SRS to determine whether ASD can be distinguished from non-ASD using a similarly small subset of questions. To explore feature redundancies between the SRS questions, we performed filter, wrapper, and embedded feature selection analyses. To explore the linearity of the SRS-related ASD phenotype, we then compressed the 65-question SRS into low-dimension representations using PCA, t-SNE, and a denoising autoencoder. We measured the performance of a multilayer perceptron (MLP) classifier with the top-ranking questions as input. Classification using only the top-rated question resulted in an AUC of over 92% for SRS-derived diagnoses and an AUC of over 83% for dataset-specific diagnoses. High redundancy of features have implications towards replacing the social behaviors that are targeted in behavioral diagnostics and interventions, where digital quantification of certain features may be obfuscated due to privacy concerns. We similarly evaluated the performance of an MLP classifier trained on the low-dimension representations of the SRS, finding that the denoising autoencoder achieved slightly higher performance than the PCA and t-SNE representations.

Indexed as

Autism Spectrum DisorderChild BehaviorComputational BiologyChildData AnalysisFemaleHumansMalePhenotypeSocial Behavior

Identifiers

PMID31797640
PMCPMC6927820

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.