Evidence map›Paper›PMID 31797165›Full record

ArticleMetabolomics : Official journal of the Metabolomic Society2019

Common and distinct variation in data fusion of designed experimental data.

Masoumeh Alinaghi, Hanne Christine Bertram, Anders Brunse, Age K Smilde, Johan A Westerhuis

Abstract read
In one paragraph

Article in Metabolomics : Official journal of the Metabolomic Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Masoumeh AlinaghiDepartment of Food Science, Aarhus University, Aarslev, Denmark.
Hanne Christine BertramDepartment of Food Science, Aarhus University, Aarslev, Denmark.
Anders BrunseComparative Pediatrics and Nutrition, Department of Veterinary and Animal Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Age K SmildeBiosystems Data Analysis, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands.
Johan A WesterhuisBiosystems Data Analysis, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands. j.a.westerhuis@uva.nl.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionIntegrative analysis of multiple data sets can provide complementary information about the studied biological system. However, data fusion of multiple biological data sets can be complicated as data sets might contain different sources of variation due to underlying experimental factors. Therefore, taking the experimental design of data sets into account could be of importance in data fusion concept.

objectivesIn the present work, we aim to incorporate the experimental design information in the integrative analysis of multiple designed data sets.

methodsHere we describe penalized exponential ANOVA simultaneous component analysis (PE-ASCA), a new method for integrative analysis of data sets from multiple compartments or analytical platforms with the same underlying experimental design.

resultsUsing two simulated cases, the result of simultaneous component analysis (SCA), penalized exponential simultaneous component analysis (P-ESCA) and ANOVA-simultaneous component analysis (ASCA) are compared with the proposed method. Furthermore, real metabolomics data obtained from NMR analysis of two different brains tissues (hypothalamus and midbrain) from the same piglets with an underlying experimental design is investigated by PE-ASCA.

conclusionsThis method provides an improved understanding of the common and distinct variation in response to different experimental factors.

Indexed as

MetabolomicsResearch DesignAlgorithmsAnimalsHypothalamusMesencephalonNuclear Magnetic Resonance, BiomolecularPrincipal Component AnalysisSwineANOVA-simultaneous component analysis (ASCA)Concave penaltyData integrationMultiset data analysisNMR metabolomics

Identifiers

PMID31797165
PMCPMC6890597

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.