Evidence map›Paper›PMID 31796800›Full record

ArticleScientific reports2019

The myopia susceptibility locus vasoactive intestinal peptide receptor 2 (VIPR2) contains variants with opposite effects.

Kim Hung Leung, Shumeng Luo, Regina Kwarteng, Sin-Guang Chen, Maurice K H Yap, Chien-Ling Huang, Shea Ping Yip

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  7. Confusoside fromMolecules (Basel, Switzerland) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kim Hung LeungDepartment of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong SAR, China.
Shumeng LuoDepartment of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong SAR, China.
Regina KwartengDepartment of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong SAR, China.
Sin-Guang ChenDepartment of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong SAR, China.
Maurice K H YapSchool of Optometry, The Hong Kong Polytechnic University, Hong Kong SAR, China.ORCID http://orcid.org/0000-0003-4687-4101
Chien-Ling HuangDepartment of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong SAR, China. cl.huang@polyu.edu.hk.
Shea Ping YipDepartment of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong SAR, China. shea.ping.yip@polyu.edu.hk.ORCID http://orcid.org/0000-0002-2170-8185

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Myopia is the commonest eye disorder in the world. High myopes are predisposed to ocular pathologies. The vasoactive intestinal peptide receptor 2 (VIPR2) gene was identified as a myopia susceptibility locus by our group and another group. We continued to fine-map this locus. A case-control study was performed in 4 sequential stages with a total of 941 highly myopic subjects and 846 control subjects, all unrelated Chinese. Stage 1 experimentally genotyped 64.4% of the entire cohort for 152 single-nucleotide polymorphisms (SNPs) and Stage 2 the remaining subjects for 21 SNPs. Stage 3 combined the genotypes for 21 SNPs for the entire cohort, and identified one group of high-risk haplotypes and one group of protective haplotypes significantly associated with high myopia. Stage 4 imputed genotypes for variants in the VIPR2 region and identified two independent groups of variants: one group with high-risk minor alleles and another with protective minor alleles. Variants within each group were generally in strong linkage disequilibrium among themselves while high-risk variants were in linkage equilibrium with protective variants. Therefore, the VIPR2 locus seems to contain variants with opposite effects. This is the first study that has examined the genetic architecture of a myopia susceptibility locus in detail.

Indexed as

AdultAllelesAsian PeopleCase-Control StudiesCohort StudiesFemaleGenetic Predisposition to DiseaseGenotypeHaplotypesHumansLinkage DisequilibriumMaleMyopia, DegenerativePolymorphism, Single NucleotideReceptors, Vasoactive Intestinal Peptide, Type IIReceptors, Vasoactive Intestinal Peptide, Type IIVIPR2 protein, human

Identifiers

PMID31796800
PMCPMC6890636

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.