Evidence map›Paper›PMID 31796791›Full record

ArticleScientific reports2019

Mn oxide formation by phototrophs: Spatial and temporal patterns, with evidence of an enzymatic superoxide-mediated pathway.

Dominique L Chaput, Alexandré J Fowler, Onyou Seo, Kelly Duhn, Colleen M Hansel, Cara M Santelli

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Carbon Metabolism of a Soilborne Mn(II)-OxidizingInternational journal of molecular sciences · 2022
    Article
  8. Review
  9. Article
  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Dominique L ChaputDepartment of Mineral Sciences, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA. d.chaput@exeter.ac.uk.
Alexandré J FowlerDepartment of Mineral Sciences, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA.
Onyou SeoDepartment of Mineral Sciences, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA.
Kelly DuhnDepartment of Earth and Environmental Sciences, University of Minnesota - Twin Cities, Minneapolis, MN, USA.
Colleen M HanselMarine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.ORCID http://orcid.org/0000-0002-3506-7710
Cara M SantelliDepartment of Mineral Sciences, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA. santelli@umn.edu.
Smithsonian Institution · USUniversity of Minnesota · USWoods Hole Oceanographic Institution · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Manganese (Mn) oxide minerals influence the availability of organic carbon, nutrients and metals in the environment. Oxidation of Mn(II) to Mn(III/IV) oxides is largely promoted by the direct and indirect activity of microorganisms. Studies of biogenic Mn(II) oxidation have focused on bacteria and fungi, with phototrophic organisms (phototrophs) being generally overlooked. Here, we isolated phototrophs from Mn removal beds in Pennsylvania, USA, including fourteen Chlorophyta (green algae), three Bacillariophyta (diatoms) and one cyanobacterium, all of which consistently formed Mn(III/IV) oxides. Isolates produced cell-specific oxides (coating some cells but not others), diffuse biofilm oxides, and internal diatom-specific Mn-rich nodules. Phototrophic Mn(II) oxidation had been previously attributed to abiotic oxidation mediated by photosynthesis-driven pH increases, but we found a decoupling of Mn oxide formation and pH alteration in several cases. Furthermore, cell-free filtrates of some isolates produced Mn oxides at specific time points, but this activity was not induced by Mn(II). Manganese oxide formation in cell-free filtrates occurred via reaction with the oxygen radical superoxide produced by soluble extracellular proteins. Given the known widespread ability of phototrophs to produce superoxide, the contribution of phototrophs to Mn(II) oxidation in the environment may be greater and more nuanced than previously thought.

Indexed as

Phototrophic ProcessesChlorophytaCyanobacteriaDiatomsHydrogen-Ion ConcentrationManganese CompoundsMetabolic Networks and PathwaysOxidation-ReductionOxidesSuperoxidesManganese Compoundsmanganese oxideOxidesSuperoxides

Identifiers

PMID31796791
PMCPMC6890756
OpenAlexW2993662395

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.