Evidence map›Paper›PMID 31792795›Full record

ReviewChromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology2020

Application and prospects of CRISPR/Cas9-based methods to trace defined genomic sequences in living and fixed plant cells.

Solmaz Khosravi, Takayoshi Ishii, Steven Dreissig, Andreas Houben

Abstract readReview
PubMed Publisher
In one paragraph

Review in Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. A sampling of methods to study chromosome and genome structure and function.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2020
    Article
  8. RNA-Targeting CRISPR-Cas Systems and Their Applications.International journal of molecular sciences · 2020
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Solmaz KhosraviLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, 06466, Seeland, Germany.ORCID http://orcid.org/0000-0002-7781-1085
Takayoshi IshiiArid Land Research Center (ALRC), Tottori University, 1390 Hamasaka, Tottori, 680-0001, Japan.ORCID http://orcid.org/0000-0001-6370-3289
Steven DreissigLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, 06466, Seeland, Germany.ORCID http://orcid.org/0000-0002-4766-9698
Andreas HoubenLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, 06466, Seeland, Germany. houben@ipk-gatersleben.de.ORCID http://orcid.org/0000-0003-3419-239X
Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) · DETottori University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The 3D organization of chromatin plays an important role in genome stability and many other pivotal biological programs. Therefore, the establishment of imaging methods, which enable us to study the dynamics of chromatin in living cells, is necessary. Although primary live cell imaging methods were a breakthrough, there is a need to develop more specific labeling techniques. With the discovery of programmable DNA binding proteins, such zinc finger proteins (ZFP), transcription activator-like effectors (TALE), and clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9), a major leap forward was made. Here, we review the applications and potential of fluorescent repressor-operator systems, programmable DNA binding proteins with an emphasis on CRISPR-based chromatin imaging in living and fixed cells, and their potential application in plant science.

Indexed as

CRISPR-Cas SystemsGene EditingGenome, PlantGenomicsPlant CellsDNA-Binding ProteinsGene Expression Regulation, PlantGenes, ReporterGenetic EngineeringMolecular ImagingPromoter Regions, GeneticTrans-ActivatorsZinc FingersDNA-Binding ProteinsTrans-Activatorschromatin dynamicsCRISPR/Cas9FISHlive cell imagingRGEN-ISLtelomere

Identifiers

PMID31792795
OpenAlexW2993802481

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.