Evidence map›Paper›PMID 31792290›Full record

ArticleNature communications2019

General structural features that regulate integrin affinity revealed by atypical αVβ8.

Jianchuan Wang, Yang Su, Roxana E Iacob, John R Engen, Timothy A Springer

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Article
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  7. Review
  8. Article
  9. Molecular View on theJournal of chemical information and modeling · 2023
    Article
  10. Family-wide analysis of integrin structures predicted by AlphaFold2.bioRxiv : the preprint server for biology · 2023
    Article
  11. Article
  12. Review
  13. A specialized integrin-binding motif enables proTGF-β2 activation by integrin αVβ6 but not αVβ8.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. bioRxiv : the preprint server for biology · 2023
    Article
  15. Article
  16. Family-wide analysis of integrin structures predicted by AlphaFold2.Computational and structural biotechnology journal · 2023
    Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jianchuan WangProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA, USA.ORCID http://orcid.org/0000-0002-2604-2263
Yang SuProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA, USA.
Roxana E IacobDepartment of Chemistry and Chemical Biology, Northeastern University, Boston, MA, 02115, USA.
John R EngenDepartment of Chemistry and Chemical Biology, Northeastern University, Boston, MA, 02115, USA.ORCID http://orcid.org/0000-0002-6918-9476
Timothy A SpringerProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA, USA. springer_lab@crystal.harvard.edu.ORCID http://orcid.org/0000-0001-6627-2904
Boston Children's Hospital · USNortheastern University · US

Funding

Atypical Integrin alphaV beta8R01HL134723 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI SPRINGER, TIMOTHY A · 2017 to 2020
$1.8M
NHLBI NIH HHS R01 HL134723
6 · The paper itself

Abstract

Integrin αVβ8, which like αVβ6 functions to activate TGF-βs, is atypical. Its β8 subunit binds to a distinctive cytoskeleton adaptor and does not exhibit large changes in conformation upon binding to ligand. Here, crystal structures, hydrogen-deuterium exchange dynamics, and affinity measurements on mutants are used to compare αVβ8 and αVβ6. Lack of a binding site for one of three βI domain divalent cations and a unique β6-α7 loop conformation in β8 facilitate movements of the α1 and α1' helices at the ligand binding pocket toward the high affinity state, without coupling to β6-α7 loop reshaping and α7-helix pistoning that drive large changes in βI domain-hybrid domain orientation seen in other integrins. Reciprocal swaps between β6 and β8 βI domains increase affinity of αVβ6 and decrease affinity of αVβ8 and define features that regulate affinity of the βI domain and its coupling to the hybrid domain.

Indexed as

Amino Acid SequenceBinding SitesHumansIntegrin beta ChainsIntegrinsLigandsProtein DomainsProtein Structure, SecondarySequence Alignmentintegrin alphavbeta8Integrin beta ChainsIntegrinsLigands

Identifiers

PMID31792290
PMCPMC6889490
OpenAlexW2991024615

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.