Evidence map›Paper›PMID 31792250›Full record

ArticleScientific reports2019

Structural genomics applied to the rust fungus Melampsora larici-populina reveals two candidate effector proteins adopting cystine knot and NTF2-like protein folds.

Karine de Guillen, Cécile Lorrain, Pascale Tsan, Philippe Barthe, Benjamin Petre, Natalya Saveleva, Nicolas Rouhier, Sébastien Duplessis, André Padilla, Arnaud Hecker

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. In Silico Analysis of aPathogens (Basel, Switzerland) · 2023
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Karine de GuillenCentre de Biochimie Structurale (CBS), INSERM U1054, CNRS UMR 5048, Univ Montpellier, F-34090, Montpellier, France.
Cécile LorrainUniversité de Lorraine, INRA, IAM, F-54000, Nancy, France.
Pascale TsanUniversité de Lorraine, CNRS, CRM2, F-54000, Nancy, France.
Philippe BartheCentre de Biochimie Structurale (CBS), INSERM U1054, CNRS UMR 5048, Univ Montpellier, F-34090, Montpellier, France.
Benjamin PetreUniversité de Lorraine, INRA, IAM, F-54000, Nancy, France.
Natalya SavelevaUniversité de Lorraine, INRA, IAM, F-54000, Nancy, France.
Nicolas RouhierUniversité de Lorraine, INRA, IAM, F-54000, Nancy, France.
Sébastien DuplessisUniversité de Lorraine, INRA, IAM, F-54000, Nancy, France.
André PadillaCentre de Biochimie Structurale (CBS), INSERM U1054, CNRS UMR 5048, Univ Montpellier, F-34090, Montpellier, France.
Arnaud HeckerUniversité de Lorraine, INRA, IAM, F-54000, Nancy, France. arnaud.hecker@univ-lorraine.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rust fungi are plant pathogens that secrete an arsenal of effector proteins interfering with plant functions and promoting parasitic infection. Effectors are often species-specific, evolve rapidly, and display low sequence similarities with known proteins. How rust fungal effectors function in host cells remains elusive, and biochemical and structural approaches have been scarcely used to tackle this question. In this study, we produced recombinant proteins of eleven candidate effectors of the leaf rust fungus Melampsora larici-populina in Escherichia coli. We successfully purified and solved the three-dimensional structure of two proteins, MLP124266 and MLP124017, using NMR spectroscopy. Although both MLP124266 and MLP124017 show no sequence similarity with known proteins, they exhibit structural similarities to knottins, which are disulfide-rich small proteins characterized by intricate disulfide bridges, and to nuclear transport factor 2-like proteins, which are molecular containers involved in a wide range of functions, respectively. Interestingly, such structural folds have not been reported so far in pathogen effectors, indicating that MLP124266 and MLP124017 may bear novel functions related to pathogenicity. Our findings show that sequence-unrelated effectors can adopt folds similar to known proteins, and encourage the use of biochemical and structural approaches to functionally characterize effector candidates.

Indexed as

BasidiomycotaCystineFungal ProteinsGenome, FungalModels, MolecularNuclear Magnetic Resonance, BiomolecularNucleocytoplasmic Transport ProteinsPlant DiseasesProtein ConformationProtein StabilityRecombinant ProteinsCystineFungal ProteinsNucleocytoplasmic Transport ProteinsRecombinant Proteins

Identifiers

PMID31792250
PMCPMC6889267

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.