Evidence map›Paper›PMID 31790383›Full record

ArticlePLoS computational biology2019

Statistics of correlated percolation in a bacterial community.

Xiaoling Zhai, Joseph W Larkin, Kaito Kikuchi, Samuel E Redford, Ushasi Roy, Gürol M Süel, Andrew Mugler

Abstract read
In one paragraph

Article in PLoS computational biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiaoling ZhaiDepartment of Physics and Astronomy, Purdue University, West Lafayette, Indiana, United States of America.
Joseph W LarkinDivision of Biological Sciences, University of California San Diego, La Jolla, California, United States of America.ORCID 0000-0002-5660-0246
Kaito KikuchiDivision of Biological Sciences, University of California San Diego, La Jolla, California, United States of America.ORCID 0000-0002-3051-3689
Samuel E RedfordDivision of Biological Sciences, University of California San Diego, La Jolla, California, United States of America.ORCID 0000-0003-2227-4806
Ushasi RoyDepartment of Physics and Astronomy, Purdue University, West Lafayette, Indiana, United States of America.ORCID 0000-0003-3059-6661
Gürol M SüelDivision of Biological Sciences, University of California San Diego, La Jolla, California, United States of America.
Andrew MuglerDepartment of Physics and Astronomy, Purdue University, West Lafayette, Indiana, United States of America.ORCID 0000-0001-9367-7026

Funding

SYNTHETIC SYSTEMSP50GM085764 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HASTY, JEFF M, IDEKER, TREY · 2010 to 2018
$23.3M
Electrical signaling in bacterial biofilmsR01GM121888 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUEL, GUROL MEHMET · 2017 to 2020
$2.0M
Howard Hughes Medical InstituteNIGMS NIH HHS P50 GM085764NIGMS NIH HHS R01 GM121888
6 · The paper itself

Abstract

Signal propagation over long distances is a ubiquitous feature of multicellular communities, but cell-to-cell variability can cause propagation to be highly heterogeneous. Simple models of signal propagation in heterogenous media, such as percolation theory, can potentially provide a quantitative understanding of these processes, but it is unclear whether these simple models properly capture the complexities of multicellular systems. We recently discovered that in biofilms of the bacterium Bacillus subtilis, the propagation of an electrical signal is statistically consistent with percolation theory, and yet it is reasonable to suspect that key features of this system go beyond the simple assumptions of basic percolation theory. Indeed, we find here that the probability for a cell to signal is not independent from other cells as assumed in percolation theory, but instead is correlated with its nearby neighbors. We develop a mechanistic model, in which correlated signaling emerges from cell division, phenotypic inheritance, and cell displacement, that reproduces the experimentally observed correlations. We find that the correlations do not significantly affect the spatial statistics, which we rationalize using a renormalization argument. Moreover, the fraction of signaling cells is not constant in space, as assumed in percolation theory, but instead varies within and across biofilms. We find that this feature lowers the fraction of signaling cells at which one observes the characteristic power-law statistics of cluster sizes, consistent with our experimental results. We validate the model using a mutant biofilm whose signaling probability decays along the propagation direction. Our results reveal key statistical features of a correlated signaling process in a multicellular community. More broadly, our results identify extensions to percolation theory that do or do not alter its predictions and may be more appropriate for biological systems.

Indexed as

Models, BiologicalBacillus subtilisBiofilmsComputational BiologyElectrophysiological PhenomenaLab-On-A-Chip DevicesMicrobial InteractionsMicrobiotaMutationPotassiumSignal TransductionPotassium

Identifiers

PMID31790383
PMCPMC6907856

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.