Evidence map›Paper›PMID 31788572›Full record

ArticleJournal of clinical tuberculosis and other mycobacterial diseases2019

GeneXpert in stool: Diagnostic yield in Intestinal Tuberculosis.

Abu Talib, Shaheen Bhatty, Khalid Mehmood, Huda Naim, Iftikhar Haider, Hari Lal, Gohar Ali, Muhammad Nashit

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical tuberculosis and other mycobacterial diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 4 pooled it
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 4 syntheses or guidelines pooled it, 17 citations in OpenAlex.

  1. Pooled it
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  4. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Abu TalibDow Medical College, Dow University of Health Sciences., Baba-e-Urdu Road, Karachi 74200, Pakistan.
Shaheen BhattyDow Medical College, Dow University of Health Sciences., Baba-e-Urdu Road, Karachi 74200, Pakistan.
Khalid MehmoodDow Medical College, Dow University of Health Sciences., Baba-e-Urdu Road, Karachi 74200, Pakistan.
Huda NaimDow Medical College, Dow University of Health Sciences., Baba-e-Urdu Road, Karachi 74200, Pakistan.
Iftikhar HaiderDow Medical College, Dow University of Health Sciences., Baba-e-Urdu Road, Karachi 74200, Pakistan.
Hari LalDow Medical College, Dow University of Health Sciences., Baba-e-Urdu Road, Karachi 74200, Pakistan.
Gohar AliDow Medical College, Dow University of Health Sciences., Baba-e-Urdu Road, Karachi 74200, Pakistan.
Muhammad NashitDow Medical College, Dow University of Health Sciences., Baba-e-Urdu Road, Karachi 74200, Pakistan.
Dow University of Health Sciences · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDiagnosing intestinal (Luminal) tuberculosis is challenging due to limited yield of diagnostic modalities like CT scan, colonoscopy with blind ileal biopsies. GeneXpert MTB/RIF (Xpert) assays for diagnosing tuberculosis have been performed in the body secretions with excellent results. Its yield in stool is tested in this study.

objectiveThe study aims to evaluate the yield of GeneXpert assay in stool of suspected cases of intestinal tuberculosis.

methodsHundred patients with suspected intestinal tuberculosis underwent routine biochemical tests, radiological investigations, colonoscopy with caecal and blind ileal biopsies for histopathology. Fresh stool samples were collected, processed for DNA extraction, tested using 2:1 ratio of GeneXpert reagent to sample to give positive or negative results for Mycobacterium tuberculosis and Rifampicin resistance.

resultsOut of hundred participants, 52% were female. Mean age was 28.21 ± 12.13. CT scan and colonoscopy findings suggestive of TB were present in 47% and 43% participants respectively. GeneXpert in stool was positive in 20% cases. Considering mucosal biopsy with histopathology of intestinal specimens as diagnostic of abdominal Tuberculosis, sensitivity and specificity of GeneXpert was 39.1% and 85.7% respectively.

conclusionStool GeneXpert assay offers an alternative approach to detect intestinal tuberculosis rapidly with good diagnostic accuracy. Although it cannot replace the AFB culture and histopathology but contribute for early diagnosis and management.

Indexed as

GeneXpert MTB/RIF assayIleocaecal tuberculosisMycobacterium tuberculosisNucleic Acid Amplification Techniques

Identifiers

PMID31788572
PMCPMC6880003
OpenAlexW2985729095

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.