Evidence map›Paper›PMID 31788220›Full record

ArticleEcology and evolution2019

Assessment of a large number of empirical plant species niche models by elicitation of knowledge from two national experts.

Simon M Smart, Susan G Jarvis, Toshie Mizunuma, Cristina Herrero-Jáuregui, Zhou Fang, Adam Butler, Jamie Alison, Mike Wilson, Robert H Marrs

Abstract read
In one paragraph

Article in Ecology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Simon M SmartNERC Centre for Ecology & Hydrology Lancaster UK.ORCID https://orcid.org/0000-0003-2750-7832
Susan G JarvisNERC Centre for Ecology & Hydrology Lancaster UK.
Toshie MizunumaDepartment of Botany National Museum of Nature and Science Tsukuba Japan.
Cristina Herrero-JáureguiDepartment of Ecology Complutense University of Madrid Madrid Spain.ORCID https://orcid.org/0000-0001-8291-4495
Zhou FangBiomathematics & Statistics Scotland JCMB Edinburgh UK.
Adam ButlerBiomathematics & Statistics Scotland JCMB Edinburgh UK.
Jamie AlisonNERC Centre for Ecology & Hydrology Bangor UK.
Mike WilsonNERC Centre for Ecology & Hydrology Lancaster UK.
Robert H MarrsSchool of Environmental Sciences University of Liverpool Liverpool UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Quantitative models play an increasing role in exploring the impact of global change on biodiversity. To win credibility and trust, they need validating. We show how expert knowledge can be used to assess a large number of empirical species niche models constructed for the British vascular plant and bryophyte flora. Key outcomes were (a) scored assessments of each modeled species and niche axis combination, (b) guidance on models needing further development, (c) exploration of the trade-off between presenting more complex model summaries, which could lead to more thorough validation, versus the longer time these take to evaluate, (d) quantification of the internal consistency of expert opinion based on comparison of assessment scores made on a random subset of models evaluated by both experts. Overall, the experts assessed 39% of species and niche axis combinations to be "poor" and 61% to show a degree of reliability split between "moderate" (30%), "good" (25%), and "excellent" (6%). The two experts agreed in only 43% of cases, reaching greater consensus about poorer models and disagreeing most about models rated as better by either expert. This low agreement rate suggests that a greater number of experts is required to produce reliable assessments and to more fully understand the reasons underlying lack of consensus. While area under curve (AUC) statistics showed generally very good ability of the models to predict random hold-out samples of the data, there was no correspondence between these and the scores given by the experts and no apparent correlation between AUC and species prevalence. Crowd-sourcing further assessments by allowing web-based access to model fits is an obvious next step. To this end, we developed an online application for inspecting and evaluating the fit of each niche surface to its training data.

Indexed as

biodiversitybryophytesforecastingglobal changespecies distribution modelstatistical modelvascular plants

Identifiers

PMID31788220
PMCPMC6875586

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.