Evidence map›Paper›PMID 31787087›Full record

ArticleBMC bioinformatics2019

A supervised term ranking model for diversity enhanced biomedical information retrieval.

Bo Xu, Hongfei Lin, Liang Yang, Kan Xu, Yijia Zhang, Dongyu Zhang, Zhihao Yang, Jian Wang, Yuan Lin, Fuliang Yin

Abstract read
In one paragraph

Article in BMC bioinformatics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Scientometric Study of Research in Information Retrieval in Medical Sciences.Medical journal of the Islamic Republic of Iran · 2022
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Bo XuFaculty of Electronic Information and Electrical Engineering, Dalian University of Technology, Linggong Road, Dalian, People's Republic of China. xubo@dlut.edu.cn.
Hongfei LinFaculty of Electronic Information and Electrical Engineering, Dalian University of Technology, Linggong Road, Dalian, People's Republic of China. hflin@dlut.edu.cn.
Liang YangFaculty of Electronic Information and Electrical Engineering, Dalian University of Technology, Linggong Road, Dalian, People's Republic of China.
Kan XuFaculty of Electronic Information and Electrical Engineering, Dalian University of Technology, Linggong Road, Dalian, People's Republic of China.
Yijia ZhangFaculty of Electronic Information and Electrical Engineering, Dalian University of Technology, Linggong Road, Dalian, People's Republic of China.
Dongyu ZhangFaculty of Electronic Information and Electrical Engineering, Dalian University of Technology, Linggong Road, Dalian, People's Republic of China.
Zhihao YangFaculty of Electronic Information and Electrical Engineering, Dalian University of Technology, Linggong Road, Dalian, People's Republic of China.
Jian WangFaculty of Electronic Information and Electrical Engineering, Dalian University of Technology, Linggong Road, Dalian, People's Republic of China.
Yuan LinWISE Lab, School of Public Administration and Law, Dalian University of Technology, Linggong Road, Dalian, People's Republic of China.
Fuliang YinFaculty of Electronic Information and Electrical Engineering, Dalian University of Technology, Linggong Road, Dalian, People's Republic of China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe number of biomedical research articles have increased exponentially with the advancement of biomedicine in recent years. These articles have thus brought a great difficulty in obtaining the needed information of researchers. Information retrieval technologies seek to tackle the problem. However, information needs cannot be completely satisfied by directly introducing the existing information retrieval techniques. Therefore, biomedical information retrieval not only focuses on the relevance of search results, but also aims to promote the completeness of the results, which is referred as the diversity-oriented retrieval.

resultsWe address the diversity-oriented biomedical retrieval task using a supervised term ranking model. The model is learned through a supervised query expansion process for term refinement. Based on the model, the most relevant and diversified terms are selected to enrich the original query. The expanded query is then fed into a second retrieval to improve the relevance and diversity of search results. To this end, we propose three diversity-oriented optimization strategies in our model, including the diversified term labeling strategy, the biomedical resource-based term features and a diversity-oriented group sampling learning method. Experimental results on TREC Genomics collections demonstrate the effectiveness of the proposed model in improving the relevance and the diversity of search results.

conclusionsThe proposed three strategies jointly contribute to the improvement of biomedical retrieval performance. Our model yields more relevant and diversified results than the state-of-the-art baseline models. Moreover, our method provides a general framework for improving biomedical retrieval performance, and can be used as the basis for future work.

Indexed as

AlgorithmsBiomedical ResearchInformation Storage and RetrievalModels, TheoreticalGenomicsBiomedical information retrievalDiversity-oriented retrievalLearning to rankMachine learningSupervised query expansionTerm ranking model

Identifiers

PMID31787087
PMCPMC6886246

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.