Evidence map›Paper›PMID 31786741›Full record

ArticleFood and environmental virology2020

The First Detection of Human Bocavirus Species 2 and 3 in Raw Sewage and Mussels in South Africa.

Oikwathaile Onosi, Nicole S Upfold, Michael D Jukes, Garry A Luke, Caroline Knox

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Food and environmental virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 2 pooled it
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 2 syntheses or guidelines pooled it, 18 citations in OpenAlex.

  1. Pooled it
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  6. Bocaparvovirus in infants hospitalized in a neonatal intensive care unit in Midwest Brazil during the COVID-19 pandemic (2021-2022).Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Oikwathaile OnosiDepartment of Biochemistry and Microbiology, Rhodes University, Grahamstown, 6140, South Africa.
Nicole S UpfoldDepartment of Biochemistry and Microbiology, Rhodes University, Grahamstown, 6140, South Africa. nicole.s.upfold@gmail.com.ORCID 0000-0001-8556-0370
Michael D JukesDepartment of Biochemistry and Microbiology, Rhodes University, Grahamstown, 6140, South Africa.
Garry A LukeCentre for Biomolecular Sciences, School of Biology, Biomolecular Sciences Building, University of St Andrews, North Haugh, St Andrews, KY16 9ST, Scotland, UK.
Caroline KnoxDepartment of Biochemistry and Microbiology, Rhodes University, Grahamstown, 6140, South Africa.
Rhodes University · ZAUniversity of St Andrews · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human bocavirus (HBoV) has a global distribution and is associated with respiratory and enteric infections, particularly in the paediatric population. In this study, raw sewage and mussel samples were analysed for the presence of HBoV using nested PCR with primers targeting the VP1/VP2 junction. Amplification and sequencing of the 382 bp region followed by phylogenetic analysis indicated the presence of HBoV 2 in mussel samples and HBoV 3 in sewage samples. This is the first report describing the presence of enteric-associated HBoV in environmental samples from South Africa and in mussel samples from the African continent. The results signify the need for further studies examining the potential risk of foodborne transmission of HBoV and highlight the importance of continued screening to determine the prevalence and epidemiology of HBoV in South Africa.

Indexed as

AnimalsBivalviaFood ContaminationHuman bocavirusHumansParvoviridae InfectionsPhylogenyPolymerase Chain ReactionSewageShellfishSouth AfricaSewageEntericHuman bocavirusParvoviridaeShellfishWastewater

Identifiers

PMID31786741
OpenAlexW2991263409

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.