Evidence map›Paper›PMID 31786076›Full record

ArticleAcademic radiology2020

Generalized Linear Binning to Compare Hyperpolarized

Mu He, Ziyi Wang, Leith Rankine, Sheng Luo, John Nouls, Rohan Virgincar, Joseph Mammarappallil, Bastiaan Driehuys

Abstract read
In one paragraph

Article in Academic radiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Magnetic resonance in medicine · 2025
    Article
  8. Quantifying abnormal alveolar microstructure in cystic fibrosis lung disease via hyperpolarizedJournal of cystic fibrosis : official journal of the European Cystic Fibrosis Society · 2024
    Article
  9. Article
  10. Bias field correction in hyperpolarizedMagnetic resonance in medicine · 2022
    Article
  11. Article
  12. Regional Gas Exchange Measured byJournal of magnetic resonance imaging : JMRI · 2021
    Article
  13. Using hyperpolarizedJournal of applied physiology (Bethesda, Md. : 1985) · 2021
    Article
  14. In vivo methods and applications of xenon-129 magnetic resonance.Progress in nuclear magnetic resonance spectroscopy · 2021
    Review
  15. QuantitativeScientific reports · 2020
    Article
  16. HyperpolarizedRespiratory medicine
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Mu HeDepartment of Electrical and Computer Engineering, Duke University, Durham, North Carolina; Center for In Vivo Microscopy, Duke University Medical Center, Box 3302, Durham, NC 27710.
Ziyi WangCenter for In Vivo Microscopy, Duke University Medical Center, Box 3302, Durham, NC 27710; Department of Biomedical Engineering, Duke University, Durham, North Carolina.
Leith RankineCenter for In Vivo Microscopy, Duke University Medical Center, Box 3302, Durham, NC 27710; Medical Physics Graduate Program, Duke University Medical Center, Durham, North Carolina.
Sheng LuoDepartment of Biostatistics & Bioinformatics, Duke University Medical Center, Durham, North Carolina.
John NoulsCenter for In Vivo Microscopy, Duke University Medical Center, Box 3302, Durham, NC 27710; Department of Radiology, Duke University Medical Center, Durham, North Carolina.
Rohan VirgincarCenter for In Vivo Microscopy, Duke University Medical Center, Box 3302, Durham, NC 27710; Department of Biomedical Engineering, Duke University, Durham, North Carolina.
Joseph MammarappallilDepartment of Radiology, Duke University Medical Center, Durham, North Carolina.
Bastiaan DriehuysCenter for In Vivo Microscopy, Duke University Medical Center, Box 3302, Durham, NC 27710; Department of Biomedical Engineering, Duke University, Durham, North Carolina; Medical Physics Graduate Program, Duke University Medical Center, Durham, North Carolina; Department of Radiology, Duke University Medical Center, Durham, North Carolina. Electronic address: bastiaan.driehuys@duke.edu.

Funding

Early Detection of Changes in Pulmonary Gas Exchange by Hyperpolarized Xe MRIR01HL105643 · NHLBI · DUKE UNIVERSITY · PI Bastiaan Driehuys · 2011 to 2026
$6.7M
Using MRI To Visualize Regional Therapy Response In Idiopathic Pulmonary FibrosisR01HL126771 · NHLBI · DUKE UNIVERSITY · PI Bastiaan Driehuys · 2015 to 2026
$6.6M
NHLBI NIH HHS HHSN268201700001CNHLBI NIH HHS HHSN268201700001INHLBI NIH HHS R01 HL105643NHLBI NIH HHS R01 HL126771
6 · The paper itself

Abstract

rationaleHyperpolarized

methodsThis study included 36 patients who had undergone both multislice GRE ventilation and 3D radial gas exchange imaging. Images were then quantified by linear binning to classify voxels into one of four clusters: ventilation defect percentage (VDP), Low-, Medium- or High-ventilation percentage (LVP, MVP, HVP). For 3D radial images, linear binning thresholds were generalized using a Box-Cox rescaled reference histogram. We compared the cluster populations from the two ventilation acquisitions both numerically and spatially.

resultsInteracquisition Bland-Altman limits of agreement for the clusters between 3D radial vs GRE were (-7% to 5%) for VDP, (-10% to 14%) for LVP, and (-8% to 8%) for HVP. While binning maps were qualitatively similar between acquisitions, their spatial overlap was modest for VDP (Dice = 0.5 ± 0.2), and relatively poor for LVP (0.3 ± 0.1) and HVP (0.2 ± 0.1).

conclusionBoth acquisitions yield reasonably concordant VDP and qualitatively similar maps. However, poor regional agreement (Dice) suggests that the two acquisitions cannot yet be used interchangeably. However, further improvements in 3D radial resolution and reconciliation of bias field correction may well obviate the need for a dedicated ventilation scan in many cases.

Indexed as

Pulmonary VentilationXenon IsotopesHumansLungMagnetic Resonance ImagingRespirationXenon Isotopes3D RadialAcquisitionHyperpolarized (129)Xe MRIMultislice GREQuantification

Identifiers

PMID31786076
PMCPMC7250711

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.