Evidence map›Paper›PMID 31785171›Full record

ArticleThe Plant journal : for cell and molecular biology2020

Dormancy cycling: translation-related transcripts are the main difference between dormant and non-dormant seeds in the field.

Gonda Buijs, Afke Vogelzang, Harm Nijveen, Leónie Bentsink

Open access · hybridAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
7.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 50 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. A Travel through Landscapes of Seed Dormancy.Plants (Basel, Switzerland) · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Seed dormancy varies widely amongEcology and evolution · 2022
    Article
  16. Review
  17. Article
  18. Review
  19. Review
  20. Network Analysis PrioritizesG3 (Bethesda, Md.) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Gonda BuijsWageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University, Wageningen, the Netherlands.ORCID 0000-0002-5049-8826
Afke VogelzangWageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University, Wageningen, the Netherlands.
Harm NijveenBioinformatics Group, Wageningen University, Wageningen, the Netherlands.ORCID 0000-0002-9167-4945
Leónie BentsinkWageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University, Wageningen, the Netherlands.ORCID 0000-0001-9510-6059
Wageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Primary seed dormancy is a mechanism that orchestrates the timing of seed germination in order to prevent out-of-season germination. Secondary dormancy can be induced in imbibed seeds when they encounter prolonged unfavourable conditions. Secondary dormancy is not induced during dry storage, and therefore the mechanisms underlying this process have remained largely unexplored. Here, a 2-year seed burial experiment in which dormancy cycling was studied at the physiological and transcriptional level is presented. For these analyses six different Arabidopsis thaliana genotypes were used: Landsberg erecta (Ler) and the dormancy associated DELAY OF GERMINATION (DOG) near-isogenic lines 1, 2, 3, 6 and 22 (NILDOG1, 2, 3, 6 and 22). The germination potential of seeds exhumed from the field showed that these seeds go through dormancy cycling and that the dynamics of this cycling is genotype dependent. RNA-seq analysis revealed large transcriptional changes during dormancy cycling, especially at the time points preceding shifts in dormancy status. Dormancy cycling is driven by soil temperature and the endosperm is important in the perception of the environment. Genes that are upregulated in the low- to non-dormant stages are enriched for genes involved in translation, indicating that the non-dormant seeds are prepared for rapid seed germination.

Indexed as

TranscriptomeArabidopsisArabidopsis ProteinsGene Expression ProfilingGenotypeGerminationPlant DormancySeasonsSeedsSoilTemperatureArabidopsis ProteinsSoilArabidopsis thalianaDELAY OF GERMINATIONdormancy cyclingfield experimentsecondary dormancyseed biologytranscriptomics

Identifiers

PMID31785171
PMCPMC7217185
OpenAlexW2990491717

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.