Evidence map›Paper›PMID 31784728›Full record

ArticleNature genetics2019

Neuronal impact of patient-specific aberrant NRXN1α splicing.

Erin Flaherty, Shijia Zhu, Natalie Barretto, Esther Cheng, P J Michael Deans, Michael B Fernando, Nadine Schrode, Nancy Francoeur, Alesia Antoine, Khaled Alganem and 13 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed, 1 pooled it
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 1 synthesis or guideline pooled it, 131 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Intrafamilial Variability inInternational journal of molecular sciences · 2026
    Review
  10. Article
  11. Article
  12. Article
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  14. Article
  15. Article
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  19. Article
  20. Cell-type-resolvedbioRxiv : the preprint server for biology · 2025
    Article

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 1 country.

Erin Flaherty *Nash Family Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Shijia Zhu *Department of Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Natalie BarrettoGraduate School of Biomedical Science, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0002-1208-0453
Esther ChengGraduate School of Biomedical Science, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
P J Michael DeansFriedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Michael B FernandoNash Family Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0002-4620-8048
Nadine SchrodeFriedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0001-5315-6816
Nancy FrancoeurDepartment of Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Alesia AntoineDepartment of Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Khaled AlganemDepartment of Neurosciences, Institute in the College of Medicine & Life Sciences, The University of Toledo, Toledo, OH, USA.
Madeline HalpernGraduate School of Biomedical Science, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Gintaras DeikusDepartment of Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Hardik ShahDepartment of Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Megan FitzgeraldFriedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Ian LadranFriedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Peter GochmanChildhood Psychiatry Branch, National Institute of Mental Health, National Institutes of Health, Bethesda, MD, USA.
Judith RapoportChildhood Psychiatry Branch, National Institute of Mental Health, National Institutes of Health, Bethesda, MD, USA.
Nadejda M TsankovaNash Family Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Robert McCullumsmithDepartment of Neurosciences, Institute in the College of Medicine & Life Sciences, The University of Toledo, Toledo, OH, USA.
Gabriel E HoffmanDepartment of Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID http://orcid.org/0000-0002-0957-0224
Robert SebraDepartment of Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Gang FangDepartment of Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA. gang.fang@mssm.edu.ORCID http://orcid.org/0000-0002-2462-9124
Kristen J BrennandNash Family Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA. kristen.brennand@mssm.edu.ORCID http://orcid.org/0000-0003-0993-5956
Icahn School of Medicine at Mount Sinai · USAllen Institute for Brain Science · USNational Institutes of Health · USNeurosciences Institute · USThe University of Texas Southwestern Medical Center · US

Funding

Higher Order Chromatin and Genetic Risk for SchizophreniaR01MH106056 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI AKBARIAN, SCHAHRAM, BRENNAND, KRISTEN JENNIFER · 2015 to 2023
$6.7M
Cell-type-specific NRXN1alpha alternative splicing changes in psychiatric diseaseR01MH121074 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BRENNAND, KRISTEN JENNIFER, FANG, GANG · 2019 to 2023
$4.4M
Contrasting causal microRNAs in forebrain and midbrain COS hiPSC neural cellsR01MH101454 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BRENNAND, KRISTEN JENNIFER · 2013 to 2017
$2.8M
Transforming Genomics with 5 PB Big Omics Data Engine Cray CS300-AC SupercomputerS10OD018522 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2014 to 2014
$1.9M
Cell-specific analysis of sub-kinomes in schizophreniaR01MH107487 · NIMH · UNIVERSITY OF TOLEDO HEALTH SCI CAMPUS · PI MCCULLUMSMITH, ROBERT E, MELLER, JAREK · 2016 to 2020
$1.9M
Proteomic analysis of the postsynaptic density-95 interactome in schizophreniaR21MH107916 · NIMH · UNIVERSITY OF TOLEDO HEALTH SCI CAMPUS · PI MCCULLUMSMITH, ROBERT E · 2016 to 2017
$434k
Characterization of hiPSC-neurons from psychosis patients with neurexin-1 deletionsF31MH112285 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI FLAHERTY, ERIN · 2017 to 2018
$83k
NIH HHS S10 OD018522NIMH NIH HHS F31 MH112285NIMH NIH HHS R01 MH101454NIMH NIH HHS R01 MH106056NIMH NIH HHS R01 MH107487NIMH NIH HHS R01 MH121074NIMH NIH HHS R21 MH107916
6 · The paper itself

Abstract

NRXN1 undergoes extensive alternative splicing, and non-recurrent heterozygous deletions in NRXN1 are strongly associated with neuropsychiatric disorders. We establish that human induced pluripotent stem cell (hiPSC)-derived neurons well represent the diversity of NRXN1α alternative splicing observed in the human brain, cataloguing 123 high-confidence in-frame human NRXN1α isoforms. Patient-derived NRXN1

Indexed as

Alternative SplicingAnimalsAutism Spectrum DisorderBipolar DisorderCalcium-Binding ProteinsCase-Control StudiesFemaleGene ExpressionHeterozygoteHumansInduced Pluripotent Stem CellsMajor Depressive DisorderMaleMiceNeural Cell Adhesion MoleculesProtein IsoformsCalcium-Binding ProteinsNeural Cell Adhesion MoleculesNRXN1 protein, humanNrxn1 protein, mouseProtein Isoforms

Identifiers

PMID31784728
PMCPMC7451045
OpenAlexW2991349291

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.