Evidence map›Paper›PMID 31784634›Full record

ArticleScientific reports2019

Simple and economical biosensors for distinguishing Agrobacterium-mediated plant galls from nematode-mediated root knots.

Okhee Choi, Juyoung Bae, Byeongsam Kang, Yeyeong Lee, Seunghoe Kim, Clay Fuqua, Jinwoo Kim

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Okhee ChoiInstitute of Agriculture & Life Science, Gyeongsang National University, Jinju, 52828, Republic of Korea.
Juyoung BaeDepartment of Plant Medicine, Gyeongsang National University, Jinju, 52828, Republic of Korea.
Byeongsam KangDivision of Applied Life Science, Gyeongsang National University, Jinju, 52828, Republic of Korea.
Yeyeong LeeDepartment of Plant Medicine, Gyeongsang National University, Jinju, 52828, Republic of Korea.
Seunghoe KimDepartment of Plant Medicine, Gyeongsang National University, Jinju, 52828, Republic of Korea.
Clay FuquaDepartment of Biology, Indiana University, Bloomington, IN, 47405, USA.ORCID http://orcid.org/0000-0001-7051-1760
Jinwoo KimInstitute of Agriculture & Life Science, Gyeongsang National University, Jinju, 52828, Republic of Korea. jinwoo@gnu.ac.kr.
Gyeongsang National University · KRIndiana University Bloomington · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Agrobacterium-mediated plant galls are often misdiagnosed as nematode-mediated knots, even by experts, because the gall symptoms in both conditions are very similar. In the present study, we developed biosensor strains based on agrobacterial opine metabolism that easily and simply diagnoses Agrobacterium-induced root galls. Our biosensor consists of Agrobacterium mannitol (ABM) agar medium, X-gal, and a biosensor. The working principle of the biosensor is that exogenous nopaline produced by plant root galls binds to NocR, resulting in NocR/nopaline complexes that bind to the promoter of the nopaline oxidase gene (nox) operon and activate the transcription of noxB-lacZY, resulting in readily visualized blue pigmentation on ABM agar medium supplemented with X-gal (ABMX-gal). Similarly, exogenous octopine binds to OccR, resulting in OoxR/octopine complexes that bind to the promoter of the octopine oxidase gene (oox) operon and activate the transcription of ooxB-lacZY, resulting in blue pigmentation in the presence of X-gal. Our biosensor is successfully senses opines produced by Agrobacterium-infected plant galls, and can be applied to easily distinguish Agrobacterium crown gall disease from nematode disease.

Indexed as

Agrobacterium tumefaciensAnimalsBiosensing TechniquesNematodaPlantsPlant Tumors

Identifiers

PMID31784634
PMCPMC6884505
OpenAlexW2990717219

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.