Evidence map›Paper›PMID 31784612›Full record

ArticleScientific reports2019

Differential DNA methylation in high-grade serous ovarian cancer (HGSOC) is associated with tumor behavior.

Henry D Reyes, Eric J Devor, Akshaya Warrier, Andreea M Newtson, Jordan Mattson, Vincent Wagner, Gabrielle N Duncan, Kimberly K Leslie, Jesus Gonzalez-Bosquet

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 61 citations in OpenAlex.

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  18. Overview of Tumor Heterogeneity in High-Grade Serous Ovarian Cancers.International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Henry D ReyesDepartment of Obstetrics and Gynecology, University of Iowa Carver College of Medicine, Iowa City, IA, 52242, USA.
Eric J DevorDepartment of Obstetrics and Gynecology, University of Iowa Carver College of Medicine, Iowa City, IA, 52242, USA.ORCID http://orcid.org/0000-0001-7131-8604
Akshaya WarrierDepartment of Obstetrics and Gynecology, University of Iowa Carver College of Medicine, Iowa City, IA, 52242, USA.
Andreea M NewtsonDepartment of Obstetrics and Gynecology, University of Iowa Carver College of Medicine, Iowa City, IA, 52242, USA.
Jordan MattsonDepartment of Obstetrics and Gynecology, University of Iowa Carver College of Medicine, Iowa City, IA, 52242, USA.
Vincent WagnerDepartment of Obstetrics and Gynecology, University of Iowa Carver College of Medicine, Iowa City, IA, 52242, USA.
Gabrielle N DuncanHolden Comprehensive Cancer Center, University of Iowa Hospitals and Clinics, Iowa City, IA, 52242, USA.
Kimberly K LeslieDepartment of Obstetrics and Gynecology, University of Iowa Carver College of Medicine, Iowa City, IA, 52242, USA.
Jesus Gonzalez-BosquetDepartment of Obstetrics and Gynecology, University of Iowa Carver College of Medicine, Iowa City, IA, 52242, USA. jesus-gonzalezbosquet@uiowa.edu.ORCID http://orcid.org/0000-0002-2079-4528
University of Iowa · USGynecologic Oncology Group · USUniversity of Iowa Hospitals and Clinics · US

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Christopher K Laubenthal · 2000 to 2026
$70.0M
Targeted Therapy for Endometrial CancerR01CA099908 · NCI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI LESLIE, KIMBERLY K. · 2002 to 2023
$5.8M
MTDH regulates Fanconi anemia repair pathway to mediate drug resistanceR01CA184101 · NCI · UNIVERSITY OF IOWA · PI LESLIE, KIMBERLY K., MENG, XIANGBING · 2014 to 2018
$1.6M
NCI NIH HHS P30 CA086862NCI NIH HHS R01 CA099908NCI NIH HHS R01 CA184101
6 · The paper itself

Abstract

The epigenome offers an additional facet of cancer that can help categorize patients into those at risk of disease, recurrence, or treatment failure. We conducted a retrospective, nested, case-control study of advanced and recurrent high-grade serous ovarian cancer (HGSOC) patients in which we assessed epigenome-wide association using Illumina methylationEPIC arrays to characterize DNA methylation status and RNAseq to evaluate gene expression. Comparing HGSOC tumors with normal fallopian tube tissues we observe global hypomethylation but with skewing towards hypermethylation when interrogating gene promoters. In total, 5,852 gene interrogating probes revealed significantly different methylation. Within HGSOC, 57 probes highlighting 17 genes displayed significant differential DNA methylation between primary and recurrent disease. Between optimal vs suboptimal surgical outcomes 99 probes displayed significantly different methylation but only 29 genes showed an inverse correlation between methylation status and gene expression. Overall, differentially methylated genes point to several pathways including RAS as well as hippo signaling in normal vs primary HGSOC; valine, leucine, and isoleucine degradation and endocytosis in primary vs recurrent HGSOC; and pathways containing immune driver genes in optimal vs suboptimal surgical outcomes. Thus, differential DNA methylation identified numerous genes that could serve as potential biomarkers and/or therapeutic targets in HGSOC.

Indexed as

Epigenesis, GeneticGene Expression Regulation, NeoplasticCase-Control StudiesCell Line, TumorCystadenocarcinoma, SerousDNA MethylationFemaleHumansMiddle AgedNeoplasm GradingNeoplasm Recurrence, LocalOvarian NeoplasmsOvariectomyOvaryRetrospective StudiesSignal Transduction

Identifiers

PMID31784612
PMCPMC6884482
OpenAlexW2991102130

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.