Evidence map›Paper›PMID 31784358›Full record

ArticleMolecular cell2020

MeCP2 Represses the Rate of Transcriptional Initiation of Highly Methylated Long Genes.

Lisa D Boxer, William Renthal, Alexander W Greben, Tess Whitwam, Andrew Silberfeld, Hume Stroud, Emmy Li, Marty G Yang, Benyam Kinde, Eric C Griffith and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed, 1 pooled it
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 1 synthesis or guideline pooled it, 119 citations in OpenAlex.

  1. Meta-Analysis IdentifiesInternational journal of molecular sciences · 2022
    Pooled it
  2. MECP2Science China. Life sciences · 2026
    Article
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  10. Epigenetic Mechanisms of Suicidal Behavior Formation: A Review.Medical journal of the Islamic Republic of Iran · 2026
    Review
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20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Lisa D BoxerDepartment of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, USA.
William RenthalDepartment of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, USA.
Alexander W GrebenDepartment of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, USA.
Tess WhitwamDepartment of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, USA.
Andrew SilberfeldDepartment of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, USA.
Hume StroudDepartment of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, USA.
Emmy LiDepartment of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, USA.
Marty G YangDepartment of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, USA.
Benyam KindeDepartment of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, USA.
Eric C GriffithDepartment of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, USA.
Boyan BonevHelmholtz Pioneer Campus, Helmholtz Zentrum München, 85764 Neuherberg, Germany.
Michael E GreenbergDepartment of Neurobiology, Harvard Medical School, 220 Longwood Avenue, Boston, MA 02115, USA. Electronic address: michael_greenberg@hms.harvard.edu.
Harvard University · USHelmholtz Zentrum München · DE

Funding

Neuronal Activity-Dependent Regulation of MeCP2R01NS048276 · NINDS · HARVARD MEDICAL SCHOOL · PI GREENBERG, MICHAEL ELDON · 2004 to 2019
$6.9M
CONTROL OF LONG GENE EXPRESSION AS A NOVEL THERAPEUTIC APPROACH FOR RETT SYNDROMEK08NS101064 · NINDS · HARVARD MEDICAL SCHOOL · PI RENTHAL, WILLIAM RUSSELL · 2017 to 2021
$940k
Characterization of MeCP2-dependent gene regulation with temporal and mechanistic precisionK99NS112415 · NINDS · HARVARD MEDICAL SCHOOL · PI BOXER, LISA D. · 2019 to 2021
$268k
Investigating the Role of Long Gene Misregulation in Rett SyndromeF32NS101739 · NINDS · HARVARD MEDICAL SCHOOL · PI BOXER, LISA D. · 2017 to 2018
$118k
NINDS NIH HHS F32 NS101739NINDS NIH HHS K08 NS101064NINDS NIH HHS K99 NS112415NINDS NIH HHS R01 NS048276
6 · The paper itself

Abstract

Mutations in the methyl-DNA-binding repressor protein MeCP2 cause the devastating neurodevelopmental disorder Rett syndrome. It has been challenging to understand how MeCP2 regulates transcription because MeCP2 binds broadly across the genome and MeCP2 mutations are associated with widespread small-magnitude changes in neuronal gene expression. We demonstrate here that MeCP2 represses nascent RNA transcription of highly methylated long genes in the brain through its interaction with the NCoR co-repressor complex. By measuring the rates of transcriptional initiation and elongation directly in the brain, we find that MeCP2 has no measurable effect on transcriptional elongation, but instead represses the rate at which Pol II initiates transcription of highly methylated long genes. These findings suggest a new model of MeCP2 function in which MeCP2 binds broadly across highly methylated regions of DNA, but acts at transcription start sites to attenuate transcriptional initiation.

Indexed as

AnimalsBrainDNADNA MethylationMaleMethyl-CpG-Binding Protein 2MiceMice, KnockoutMutationNeuronsRepressor ProteinsRett SyndromeRNATranscription, GeneticDNAMecp2 protein, mouseMethyl-CpG-Binding Protein 2Repressor ProteinsRNADNA methylationMeCP2NCoRRett syndromeRNA Pol IItranscriptional elongationtranscriptional initiation

Identifiers

PMID31784358
PMCPMC6982532
OpenAlexW2990623560

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.