Evidence map›Paper›PMID 31783869›Full record

ReviewMicrobial cell factories2019

Advances and opportunities in gene editing and gene regulation technology for Yarrowia lipolytica.

Vijaydev Ganesan, Michael Spagnuolo, Ayushi Agrawal, Spencer Smith, Difeng Gao, Mark Blenner

Open access · goldAbstract readReview
In one paragraph

Review in Microbial cell factories, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 32 citations in OpenAlex.

  1. Toward Complex Polyketide Biosynthesis inJournal of microbiology and biotechnology · 2026
    Review
  2. Review
  3. Article
  4. EngineeringMetabolic engineering communications · 2023
    Article
  5. A review of synthetic biology tools in Yarrowia lipolytica.World journal of microbiology & biotechnology · 2023
    Review
  6. Heliyon · 2022
    Review
  7. Journal of fungi (Basel, Switzerland) · 2021
    Review
  8. Review
  9. Review
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Vijaydev GanesanDepartment of Chemical and Biomolecular Engineering, Clemson University, 206 S. Palmetto Blvd., Clemson, SC, 29634, USA.
Michael SpagnuoloDepartment of Chemical and Biomolecular Engineering, Clemson University, 206 S. Palmetto Blvd., Clemson, SC, 29634, USA.
Ayushi AgrawalDepartment of Chemical and Biomolecular Engineering, Clemson University, 206 S. Palmetto Blvd., Clemson, SC, 29634, USA.
Spencer SmithDepartment of Chemical and Biomolecular Engineering, Clemson University, 206 S. Palmetto Blvd., Clemson, SC, 29634, USA.
Difeng GaoDepartment of Chemical and Biomolecular Engineering, Clemson University, 206 S. Palmetto Blvd., Clemson, SC, 29634, USA.
Mark BlennerDepartment of Chemical and Biomolecular Engineering, Clemson University, 206 S. Palmetto Blvd., Clemson, SC, 29634, USA. blenner@clemson.edu.ORCID http://orcid.org/0000-0001-9274-3749
Clemson University · US

Funding

Enabling Plant Natural Product Biosynthesis by Debugging Heterologous Protein Expression in YeastR35GM133803 · NIGMS · UNIVERSITY OF DELAWARE · PI BLENNER, MARK ALAN · 2019 to 2023
$2.0M
NASA Space Technology Research Grants NNX15AU46GNational Science Foundation 1706134NIGMS NIH HHS NIH-R35GM133803NIGMS NIH HHS R35 GM133803
6 · The paper itself

Abstract

Yarrowia lipolytica has emerged as a biomanufacturing platform for a variety of industrial applications. It has been demonstrated to be a robust cell factory for the production of renewable chemicals and enzymes for fuel, feed, oleochemical, nutraceutical and pharmaceutical applications. Metabolic engineering of this non-conventional yeast started through conventional molecular genetic engineering tools; however, recent advances in gene/genome editing systems, such as CRISPR-Cas9, transposons, and TALENs, has greatly expanded the applications of synthetic biology, metabolic engineering and functional genomics of Y. lipolytica. In this review we summarize the work to develop these tools and their demonstrated uses in engineering Y. lipolytica, discuss important subtleties and challenges to using these tools, and give our perspective on important gaps in gene/genome editing tools in Y. lipolytica.

Indexed as

Gene EditingGene Expression RegulationGenetic EngineeringMetabolic EngineeringYarrowiaCRISPR–Cas9Functional genomicsGenetic toolsGenome editingMetabolic engineeringSynthetic biologyTransposonYarrowia lipolytica

Identifiers

PMID31783869
PMCPMC6884833
OpenAlexW2991013010

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.