ArticleBMC plant biology2019
Transcriptional profiling of long noncoding RNAs associated with leaf-color mutation in Ginkgo biloba L.
Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed.
- Cytological, Physiological, and Transcriptome Analysis of Leaf-Yellowing Mutant inInternational journal of molecular sciences · 2024Article
- SWATH-MS based proteomics reveals the role of photosynthesis related proteins and secondary metabolic pathways in the colored leaves of sweet olive (Osmanthus fragrans).BMC genomics · 2024Article
- Unraveling the lncRNA-miRNA-mRNA Regulatory Network Involved in Poplar Coma Development through High-Throughput Sequencing.International journal of molecular sciences · 2024Article
- Effects of different light intensity on leaf color changes in a Chinese cabbage yellow cotyledon mutant.Frontiers in plant science · 2024Article
- Localization is the key to action: regulatory peculiarities of lncRNAs.Frontiers in genetics · 2024Review
- Molecular insights into the mechanisms of a leaf color mutant in Anoectochilus roxburghii by gene mapping and transcriptome profiling based on PacBio Sequel II.Scientific reports · 2023Article
- A long-read and short-read transcriptomics approach provides the first high-quality reference transcriptome and genome annotation for Pseudotsuga menziesii (Douglas-fir).G3 (Bethesda, Md.) · 2023Article
- Dynamic transcriptome and network-based analysis of yellow leaf mutant Ginkgo biloba.BMC plant biology · 2022Article
- Population transcriptomic analysis identifies the comprehensive lncRNAs landscape of spike in wheat (Triticum aestivum L.).BMC plant biology · 2022Article
- Bidirectional lncRNA Transfer betweenInternational journal of molecular sciences · 2022Article
- Transcriptional profiling of long non-coding RNAs regulating fruit cracking inFrontiers in plant science · 2022Article
- Fine dissection of limber pine resistance to Cronartium ribicola using targeted sequencing of the NLR family.BMC genomics · 2021Article
- Regulatory role of non-coding RNA in ginseng rusty root symptom tissue.Scientific reports · 2021Article
- Differential Expression of lncRNAs and miRNAs Between Self-Rooting Juvenile and Donor Clones Unveils Novel Insight Into the Molecular Regulation of Rubber Biosynthesis inFrontiers in plant science · 2021Article
- The coloring mechanism of a novel golden variety inForestry research · 2021Article
- Comparative Analyses of Full-Length Transcriptomes RevealFrontiers in genetics · 2021Article
- A full-length transcriptome and gene expression analysis reveal genes and molecular elements expressed during seed development in Gnetum luofuense.BMC plant biology · 2020Article
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5 authors.
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Abstract
backgroundLong noncoding RNAs (lncRNAs) play an important role in diverse biological processes and have been widely studied in recent years. However, the roles of lncRNAs in leaf pigment formation in ginkgo (Ginkgo biloba L.) remain poorly understood.
resultsIn this study, lncRNA libraries for mutant yellow-leaf and normal green-leaf ginkgo trees were constructed via high-throughput sequencing. A total of 2044 lncRNAs were obtained with an average length of 702 nt and typically harbored 2 exons. We identified 238 differentially expressed lncRNAs (DELs), 32 DELs and 49 differentially expressed mRNAs (DEGs) that constituted coexpression networks. We also found that 48 cis-acting DELs regulated 72 target genes, and 31 trans-acting DELs regulated 31 different target genes, which provides a new perspective for the regulation of the leaf-color mutation. Due to the crucial regulatory roles of lncRNAs in a wide range of biological processes, we conducted in-depth studies on the DELs and their targets and found that the chloroplast thylakoid membrane subcategory and the photosynthesis pathways (ko00195) were most enriched, suggesting their potential roles in leaf coloration mechanisms. In addition, our correlation analysis indicates that eight DELs and 68 transcription factors (TFs) might be involved in interaction networks.
conclusionsThis study has enriched the knowledge concerning lncRNAs and provides new insights into the function of lncRNAs in leaf-color mutations, which will benefit future selective breeding of ginkgo.
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