Evidence map›Paper›PMID 31783570›Full record

ArticleCancers2019

Delineation of Tumor Migration Paths by Using a Bayesian Biogeographic Approach.

Antonia Chroni, Tracy Vu, Sayaka Miura, Sudhir Kumar

Abstract read
In one paragraph

Article in Cancers, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Resolving tumor evolution: a phylogenetic approach.Journal of the National Cancer Center · 2024
    Review
  4. Article
  5. Article
  6. Tumors Are Evolutionary Island-Like Ecosystems.Genome biology and evolution · 2021
    Article
  7. The somatic molecular evolution of cancer: Mutation, selection, and epistasis.Progress in biophysics and molecular biology · 2021
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Antonia ChroniInstitute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA 19122, USA.ORCID 0000-0003-3655-8252
Tracy VuInstitute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA 19122, USA.
Sayaka MiuraInstitute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA 19122, USA.ORCID 0000-0001-9881-2848
Sudhir KumarInstitute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA 19122, USA.

Funding

Bioinformatics of metastatic migration historiesR01LM013385 · NLM · TEMPLE UNIV OF THE COMMONWEALTH · PI KUMAR, SUDHIR · 2020 to 2023
$1.4M
EVOLUTIONARY BIOINFORMATICS OF TUMOR PROFILESR01LM012487 · NLM · TEMPLE UNIV OF THE COMMONWEALTH · PI KUMAR, SUDHIR · 2016 to 2018
$1.0M
Bayesian Evolution-Aware Methods for tumor single cell sequencesR21LM012758 · NLM · TEMPLE UNIV OF THE COMMONWEALTH · PI MIURA, SAYAKA · 2017 to 2018
$392k
Foundation for the National Institutes of Health LM012487NLM NIH HHS R01 LM012487NLM NIH HHS R01 LM013385NLM NIH HHS R21 LM012758Temple University LM012758
6 · The paper itself

Abstract

Understanding tumor progression and metastatic potential are important in cancer biology. Metastasis is the migration and colonization of clones in secondary tissues. Here, we posit that clone migration events between tumors resemble the dispersal of individuals between distinct geographic regions. This similarity makes Bayesian biogeographic analysis suitable for inferring cancer cell migration paths. We evaluated the accuracy of a Bayesian biogeography method (BBM) in inferring metastatic patterns and compared it with the accuracy of a parsimony-based approach (metastatic and clonal history integrative analysis, MACHINA) that has been specifically developed to infer clone migration patterns among tumors. We used computer-simulated datasets in which simple to complex migration patterns were modeled. BBM and MACHINA were effective in reliably reconstructing simple migration patterns from primary tumors to metastases. However, both of them exhibited a limited ability to accurately infer complex migration paths that involve the migration of clones from one metastatic tumor to another and from metastasis to the primary tumor. Therefore, advanced computational methods are still needed for the biologically realistic tracing of migration paths and to assess the relative preponderance of different types of seeding and reseeding events during cancer progression in patients.

Indexed as

biogeographycancerdispersalmetastasismigration pathstumor

Identifiers

PMID31783570
PMCPMC6966534

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.