Evidence map›Paper›PMID 31782837›Full record

ArticleMolecular microbiology2020

Small RNA Mcr11 requires the transcription factor AbmR for stable expression and regulates genes involved in the central metabolism of Mycobacterium tuberculosis.

Roxie C Girardin, Kathleen A McDonough

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Frontiers in cellular and infection microbiology · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Small RNA MTS1338 Configures a Stress Resistance Signature inInternational journal of molecular sciences · 2023
    Article
  10. The Biological and Clinical Aspects of a Latent Tuberculosis Infection.Tropical medicine and infectious disease · 2022
    Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. sncRNA-1 Is a Small Noncoding RNA Produced byFrontiers in microbiology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Roxie C GirardinDepartment of Biomedical Sciences, School of Public Health, University at Albany, Albany, NY.
Kathleen A McDonoughDepartment of Biomedical Sciences, School of Public Health, University at Albany, Albany, NY.ORCID 0000-0002-2813-6263
New York State Department of Health · USUniversity at Albany, State University of New York · US

Funding

cAMP signaling pathways within Mycobacterium tuberculosisR01AI063499 · NIAID · WADSWORTH CENTER · PI MCDONOUGH, KATHLEEN A · 2005 to 2016
$2.8M
Training in Biodefense and Emerging Infectious DiseaseT32AI055429 · NIAID · WADSWORTH CENTER · PI MCDONOUGH, KATHLEEN A · 2004 to 2014
$2.2M
NIAID NIH HHS R01 AI063499NIAID NIH HHS T32 AI055429
6 · The paper itself

Abstract

Mycobacterium tuberculosis (Mtb), the etiologic agent of tuberculosis, must adapt to host-associated environments during infection by modulating gene expression. Small regulatory RNAs (sRNAs) are key regulators of bacterial gene expression, but their roles in Mtb are not well understood. Here, we address the expression and function of the Mtb sRNA Mcr11, which is associated with slow bacterial growth and chronic infections in mice. We found that stable expression of Mcr11 requires multiple factors specific to TB-complex bacteria, including the AbmR transcription factor. Bioinformatic analyses used to predict regulatory targets of Mcr11 identified 7-11 nucleotide regions with potential for direct base-pairing with Mcr11 immediately upstream of Rv3282, fadA3, and lipB. mcr11-dependent regulation of these genes was demonstrated using qRT-PCR and found to be responsive to the presence of fatty acids. Mutation of the putative Mcr11 base-pairing site upstream of lipB in a promoter reporter strain resulted in significant de-repression of lipB expression, similar to that observed in mcr11-deleted Mtb. These studies establish Mcr11's roles in regulating growth and central metabolism in Mtb. Our finding that multiple TB-complex-specific factors are required for production of stable Mcr11 also emphasizes the need to better understand mechanisms of sRNA expression and stability in TB.

Indexed as

Mycobacterium tuberculosisAnimalsBacterial ProteinsComputational BiologyGene Expression Regulation, BacterialGenes, BacterialLipoylationMiceReal-Time Polymerase Chain ReactionRNA, BacterialRNA, Small UntranslatedTranscription FactorsBacterial ProteinsRNA, BacterialRNA, Small UntranslatedTranscription Factorsgene regulationlipoylationRNA stabilityRNA terminationsRNA targets

Identifiers

PMID31782837
PMCPMC7064933
OpenAlexW2990718588

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.