Evidence map›Paper›PMID 31781789›Full record

ReviewImmunogenetics2020

Nomenclature report for killer-cell immunoglobulin-like receptors (KIR) in macaque species: new genes/alleles, renaming recombinant entities and IPD-NHKIR updates.

Jesse Bruijnesteijn, Natasja G de Groot, Nel Otting, Giuseppe Maccari, Lisbeth A Guethlein, James Robinson, Steven G E Marsh, Lutz Walter, David H O'Connor, John A Hammond and 2 more

Abstract readReview
PubMed Publisher
In one paragraph

Review in Immunogenetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. MHC Class I Ligands of Rhesus Macaque Killer Cell Ig-like Receptors.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Article
  4. TheFrontiers in immunology · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. The Genomic Organization of theFrontiers in immunology · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jesse BruijnesteijnDepartment of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg 161, 2288, GJ, Rijswijk, The Netherlands. bruijnesteijn@bprc.nl.
Natasja G de GrootDepartment of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg 161, 2288, GJ, Rijswijk, The Netherlands.
Nel OttingDepartment of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg 161, 2288, GJ, Rijswijk, The Netherlands.
Giuseppe MaccariThe Pirbright Institute, Pirbright, Woking, Surrey, UK.
Lisbeth A GuethleinDepartment of Structural Biology and Department of Microbiology and Immunology, Stanford University, Stanford, CA, 94305, USA.
James RobinsonAnthony Nolan Research Institute, Royal Free Hospital, Pond Street, Hampstead, London, NW3 2QG, UK.
Steven G E MarshAnthony Nolan Research Institute, Royal Free Hospital, Pond Street, Hampstead, London, NW3 2QG, UK.
Lutz WalterPrimate Genetics Laboratory, German Primate Center, Leibniz Institute for Primate Research, 37077, Göttingen, Germany.
David H O'ConnorDepartment of Pathology and Laboratory Medicine, University of Wisconsin-Madison, Madison, WI, 53711, USA.
John A HammondThe Pirbright Institute, Pirbright, Woking, Surrey, UK.
Peter ParhamDepartment of Structural Biology and Department of Microbiology and Immunology, Stanford University, Stanford, CA, 94305, USA.
Ronald E BontropDepartment of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg 161, 2288, GJ, Rijswijk, The Netherlands.

Funding

Biotechnology and Biological Sciences Research Council BB/M011488/1Biotechnology and Biological Sciences Research Council BBS/E/I/00001710Biotechnology and Biological Sciences Research Council BBS/E/I/00007030Biotechnology and Biological Sciences Research Council BBS/E/I/00007038NIH HHS HHSN272201600007C
6 · The paper itself

Abstract

The Killer-cell Immunoglobulin-like Receptors (KIR) are encoded by a diverse group of genes, which are characterized by allelic polymorphism, gene duplications, and recombinations, which may generate recombinant entities. The number of reported macaque KIR sequences is steadily increasing, and these data illustrate a gene system that may match or exceed the complexity of the human KIR cluster. This report lists the names of quality controlled and annotated KIR genes/alleles with all the relevant references for two different macaque species: rhesus and cynomolgus macaques. Numerous recombinant KIR genes in these species necessitate a revision of some of the earlier-published nomenclature guidelines. In addition, this report summarizes the latest information on the Immuno Polymorphism Database (IPD)-NHKIR Database, which contains annotated KIR sequences from four non-human primate species.

Indexed as

Databases, FactualImmunogeneticsPolymorphism, GeneticTerminology as TopicAnimalsMacaca mulattaReceptors, KIRReceptors, KIRCynomolgusKiller-cell immunoglobulin-like receptorsMacaque speciesNomenclatureRecombinantsRhesus

Identifiers

PMID31781789

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.