Evidence map›Paper›PMID 31781628›Full record

ArticleBioMed research international2019

Tumor Mutational Burden and Genomic Alterations in Chinese Small Cell Lung Cancer Measured by Whole-Exome Sequencing.

Shan Su, Jian-Jun Zou, Yun-Yun Zeng, Wen-Chang Cen, Wei Zhou, Yan Liu, Duo-Hua Su, Xian-Lan Zhang, Hui-Yi Huang, An Lei and 7 more

Open access · hybridAbstract read
In one paragraph

Article in BioMed research international, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Small Cell Lung Cancer, Version 2.2022, NCCN Clinical Practice Guidelines in Oncology.Journal of the National Comprehensive Cancer Network : JNCCN · 2021
    Guideline
  2. Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Shan Su *Department of Oncology, Guangzhou Chest Hospital, Guangzhou, China.ORCID https://orcid.org/0000-0001-7694-8699
Jian-Jun Zou *Department of Oncology, Guangzhou Chest Hospital, Guangzhou, China.ORCID https://orcid.org/0000-0001-6274-5778
Yun-Yun ZengDepartment of Oncology, Guangzhou Chest Hospital, Guangzhou, China.ORCID https://orcid.org/0000-0003-1407-8493
Wen-Chang CenDepartment of Oncology, Guangzhou Chest Hospital, Guangzhou, China.ORCID https://orcid.org/0000-0002-0028-4758
Wei ZhouDepartment of Pathology, Guangzhou Chest Hospital, Guangzhou, China.
Yan LiuDepartment of Pathology, Guangzhou Chest Hospital, Guangzhou, China.
Duo-Hua SuDepartment of Tuberculosis Oncology, Guangzhou Chest Hospital, Guangzhou, China.ORCID https://orcid.org/0000-0001-5222-6798
Xian-Lan ZhangDepartment of Oncology, Guangzhou Chest Hospital, Guangzhou, China.ORCID https://orcid.org/0000-0002-7009-9531
Hui-Yi HuangDepartment of Oncology, Guangzhou Chest Hospital, Guangzhou, China.ORCID https://orcid.org/0000-0002-4879-5303
An LeiDepartment of Oncology, Guangzhou Chest Hospital, Guangzhou, China.
Zhi-Hao HuangDepartment of Oncology, Guangzhou Chest Hospital, Guangzhou, China.ORCID https://orcid.org/0000-0001-5385-8455
Yun JinDepartment of Oncology, Guangzhou Chest Hospital, Guangzhou, China.ORCID https://orcid.org/0000-0002-3055-6734
Lei LiDepartment of Oncology, Guangzhou Chest Hospital, Guangzhou, China.
Ning SuDepartment of Oncology, Guangzhou Chest Hospital, Guangzhou, China.
Ya-Lin XieDepartment of Oncology, Guangzhou Chest Hospital, Guangzhou, China.
Zhen-Gang ZhaoSchool of Food Science and Engineering, South China University of Technology, Guangzhou, China.ORCID https://orcid.org/0000-0003-0539-2544
Jian-Xiong LiuDepartment of Thoracic Surgery, Guangzhou Chest Hospital, Guangzhou, China.ORCID https://orcid.org/0000-0001-5860-3953
Guangzhou Chest Hospital · CNSouth China University of Technology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeStudies on genetic alterations of the heterogenous small cell lung cancer (SCLC) are rare. We carried out the present study to clarify the genomic alterations and TMB levels of Chinese SCLC patients by whole-exome sequencing. MATERIALS AND

methodsWhole-exome sequencing by next-generation sequencing technique was implemented on twenty SCLC samples. Significant somatic mutations and copy number variations were screened, followed by comparison with the data extracted from COSMIC. Besides, altered signaling pathways were examined in order to figure out actionable targets.

resultsA total of 8,062 nonsynonymous mutations were defined. The number of mutations for each case ranged from 98 to 864. As for base substitutions, a total of 15,817 substitutions were detected with C > A conversion which was correlated to smoking occupying 25.57%. The TMB values ranged from 2.51/Mb to 22.1/Mb with a median value of 9.95/Mb.

conclusion

Indexed as

Biomarkers, TumorDNA Copy Number VariationsExome SequencingFemaleGenomicsHumansLung NeoplasmsMaleMiddle AgedMutationPhosphatidylinositol 3-KinasesPTEN PhosphohydrolaseSignal TransductionSmall Cell Lung CarcinomaTOR Serine-Threonine KinasesTumor Suppressor Protein p53Biomarkers, TumorPhosphatidylinositol 3-KinasesPTEN PhosphohydrolaseTOR Serine-Threonine KinasesTumor Suppressor Protein p53

Identifiers

PMID31781628
PMCPMC6874933
OpenAlexW2983007892

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.