Evidence map›Paper›PMID 31781598›Full record

ArticleBioMed research international2019

A Comprehensive Survey of Genomic Alterations in Gastric Cancer Reveals Recurrent Neoantigens as Potential Therapeutic Targets.

Chao Chen, Qiming Zhou, Riping Wu, Bo Li, Qiang Chen, Xiuqing Zhang, Chunmei Shi

Open access · hybridAbstract read
In one paragraph

Article in BioMed research international, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

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  17. Research Progress of Immunotherapy for Gastric Cancer.Technology in cancer research & treatment
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Chao ChenBGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China.ORCID https://orcid.org/0000-0003-0990-5239
Qiming ZhouBGI-GenoImmune, Wuhan 430079, China.
Riping WuFujian Medical University Union Hospital, Fuzhou 350001, China.
Bo LiBGI-Shenzhen, Shenzhen 518083, China.
Qiang ChenFujian Medical University Union Hospital, Fuzhou 350001, China.
Xiuqing ZhangBGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China.
Chunmei ShiFujian Medical University Union Hospital, Fuzhou 350001, China.ORCID https://orcid.org/0000-0002-0172-1729
BGI Group (China) · CNFujian Medical University · CNShenzhen Genoimmune Medical Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Immunotherapy directed against cancer-specific neoantigens derived from non-silent mutants is a promising individualized strategy for cancer treatment. Neoantigens shared across patients could be used as a public resource for developing T cell-based therapy. To identify potential public neoantigens for therapy in gastric cancer (GC), 74 GC patients were enrolled in this study. Combined with the TCGA cohort and other published studies, whole exome sequencing data from 942 GC patients were used to detect somatic mutations and predict neoantigens shared by GC patients. The mutations pattern between our study and the TCGA cohort is comparable, and C > T is the most common substitution. The number of neoantigens was significantly higher in older patients (age ≥60) compared to younger patients (age <60), both in this study and the TCGA cohort. Recurrent neoantigens were found in eight genes (

Indexed as

AgedAntigens, NeoplasmCell- and Tissue-Based TherapyClass I Phosphatidylinositol 3-KinasesDatabases, GeneticExomeFemaleGenome, HumanGenomicsHumansImmunotherapyMaleMutationStomach NeoplasmsT-LymphocytesTumor Suppressor Protein p53Antigens, NeoplasmClass I Phosphatidylinositol 3-KinasesPIK3CA protein, humanTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID31781598
PMCPMC6874998
OpenAlexW2988712061

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.