Evidence map›Paper›PMID 31780796›Full record

ArticleScientific reports2019

Transcriptional control of central carbon metabolic flux in Bifidobacteria by two functionally similar, yet distinct LacI-type regulators.

Noreen Lanigan, Emer Kelly, Aleksandr A Arzamasov, Catherine Stanton, Dmitry A Rodionov, Douwe van Sinderen

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Identification of a prototype human gutFrontiers in microbiology · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Plant Glycan Metabolism by Bifidobacteria.Frontiers in microbiology · 2021
    Review
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Noreen LaniganSchool of Microbiology & APC Microbiome Ireland, University College Cork, Ireland University College Cork, Cork, Ireland.
Emer KellySchool of Microbiology & APC Microbiome Ireland, University College Cork, Ireland University College Cork, Cork, Ireland.
Aleksandr A ArzamasovSanford Burnham Prebys Medical Discovery Institute, La Jolla, United States.
Catherine StantonTeagasc Food Research Centre, Moorepark, Fermoy, Cork, Ireland.
Dmitry A RodionovSanford Burnham Prebys Medical Discovery Institute, La Jolla, United States.
Douwe van SinderenSchool of Microbiology & APC Microbiome Ireland, University College Cork, Ireland University College Cork, Cork, Ireland. d.vansinderen@ucc.ie.
University College Cork · IEDiscovery Institute · USTeagasc - The Irish Agriculture and Food Development Authority · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bifidobacteria resident in the gastrointestinal tract (GIT) are subject to constantly changing environmental conditions, which require rapid adjustments in gene expression. Here, we show that two predicted LacI-type transcription factors (TFs), designated AraQ and MalR1, are involved in regulating the central, carbohydrate-associated metabolic pathway (the so-called phosphoketolase pathway or bifid shunt) of the gut commensal Bifidobacterium breve UCC2003. These TFs appear to not only control transcription of genes involved in the bifid shunt and each other, but also seem to commonly and directly affect transcription of other TF-encoding genes, as well as genes related to uptake and metabolism of various carbohydrates. This complex and interactive network of AraQ/MalR1-mediated gene regulation provides previously unknown insights into the governance of carbon metabolism in bifidobacteria.

Indexed as

Gene Expression Regulation, BacterialAldehyde-LyasesBifidobacterium breveCarbonLac RepressorsAldehyde-LyasesCarbonLac Repressorsphosphoketolase

Identifiers

PMID31780796
PMCPMC6882875
OpenAlexW2989821387

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.