Evidence map›Paper›PMID 31780666›Full record

ArticleNature communications2019

Epithelial tumor suppressor ELF3 is a lineage-specific amplified oncogene in lung adenocarcinoma.

Katey S S Enfield, Erin A Marshall, Christine Anderson, Kevin W Ng, Sara Rahmati, Zhaolin Xu, Megan Fuller, Katy Milne, Daniel Lu, Rocky Shi and 11 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 70 citations in OpenAlex.

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  19. Actionable Driver Events in Small Cell Lung Cancer.International journal of molecular sciences · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 7 institutions in 2 countries.

Katey S S EnfieldBritish Columbia Cancer Research Centre, Vancouver, BC, Canada. katey.enfield@crick.ac.uk.ORCID http://orcid.org/0000-0002-4551-6073
Erin A MarshallBritish Columbia Cancer Research Centre, Vancouver, BC, Canada.ORCID http://orcid.org/0000-0002-2051-5226
Christine AndersonBritish Columbia Cancer Research Centre, Vancouver, BC, Canada.
Kevin W NgBritish Columbia Cancer Research Centre, Vancouver, BC, Canada.
Sara RahmatiDepartment of Medical Biophysics, University of Toronto, Toronto, ON, Canada.ORCID http://orcid.org/0000-0002-2009-4660
Zhaolin XuDalhousie University, Halifax, NS, Canada.
Megan FullerBritish Columbia Cancer Research Centre, Vancouver, BC, Canada.ORCID http://orcid.org/0000-0002-8752-8312
Katy MilneDeeley Research Centre, Victoria, BC, Canada.
Daniel LuBritish Columbia Cancer Research Centre, Vancouver, BC, Canada.
Rocky ShiBritish Columbia Cancer Research Centre, Vancouver, BC, Canada.
David A RowbothamBritish Columbia Cancer Research Centre, Vancouver, BC, Canada.
Daiana D Becker-SantosBritish Columbia Cancer Research Centre, Vancouver, BC, Canada.
Fraser D JohnsonBritish Columbia Cancer Research Centre, Vancouver, BC, Canada.
John C EnglishVancouver General Hospital, Vancouver, BC, Canada.
Calum E MacAulayBritish Columbia Cancer Research Centre, Vancouver, BC, Canada.
Stephen LamBritish Columbia Cancer Research Centre, Vancouver, BC, Canada.
William W LockwoodBritish Columbia Cancer Research Centre, Vancouver, BC, Canada.
Raj ChariFrederick National Lab for Cancer Research, Laboratory Animal Sciences Program, Frederick, MD, USA.
Aly KarsanBritish Columbia Cancer Research Centre, Vancouver, BC, Canada.ORCID http://orcid.org/0000-0001-6753-892X
Igor JurisicaKrembil Research Institute, University Health Network, Toronto, ON, Canada.
Wan L LamBritish Columbia Cancer Research Centre, Vancouver, BC, Canada. wanlam@bccrc.ca.ORCID http://orcid.org/0000-0002-0945-0644
BC Cancer Agency · CACanadian Centre for Applied Research in Cancer Control · CADalhousie University · CAFrederick National Laboratory for Cancer Research · USUniversity Health Network · CAUniversity of Toronto · CAVancouver General Hospital · CA

Funding

CIHR FDN-143345
6 · The paper itself

Abstract

Gene function in cancer is often cell type-specific. The epithelial cell-specific transcription factor ELF3 is a documented tumor suppressor in many epithelial tumors yet displays oncogenic properties in others. Here, we show that ELF3 is an oncogene in the adenocarcinoma subtype of lung cancer (LUAD), providing genetic, functional, and clinical evidence of subtype specificity. We discover a region of focal amplification at chromosome 1q32.1 encompassing the ELF3 locus in LUAD which is absent in the squamous subtype. Gene dosage and promoter hypomethylation affect the locus in up to 80% of LUAD analyzed. ELF3 expression was required for tumor growth and a pan-cancer expression network analysis supports its subtype and tissue specificity. We further show that ELF3 displays strong prognostic value in LUAD but not LUSC. We conclude that, contrary to many other tumors of epithelial origin, ELF3 is an oncogene and putative therapeutic target in LUAD.

Indexed as

A549 CellsAdenocarcinoma of LungAnimalsCarcinomaCarcinoma, Squamous CellDNA-Binding ProteinsDNA MethylationGene AmplificationGene DosageHumansLung NeoplasmsMiceNeoplasm TransplantationOncogenesProtein Interaction MapsProto-Oncogene Proteins c-etsDNA-Binding ProteinsELF3 protein, humanElf3 protein, mouseProto-Oncogene Proteins c-etsTranscription Factors

Identifiers

PMID31780666
PMCPMC6882813
OpenAlexW2989938754

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.