Evidence map›Paper›PMID 31778829›Full record

ArticleCellular and molecular gastroenterology and hepatology2020

Krüppel-like Factor 5 Regulates Stemness, Lineage Specification, and Regeneration of Intestinal Epithelial Stem Cells.

Chang-Kyung Kim, Madhurima Saxena, Kasmika Maharjan, Jane J Song, Kenneth R Shroyer, Agnieszka B Bialkowska, Ramesh A Shivdasani, Vincent W Yang

Open access · goldAbstract read
In one paragraph

Article in Cellular and molecular gastroenterology and hepatology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 46 citations in OpenAlex.

  1. Fasting primes small intestinal regeneration after damage via a microbiome-metabolite-chromatin axis.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  7. Cells · 2025
    Review
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  12. LPAAmerican journal of physiology. Gastrointestinal and liver physiology · 2024
    Article
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  15. Article
  16. Cell cycle (Georgetown, Tex.) · 2023
    Article
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  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Chang-Kyung KimDepartment of Medicine, Stony Brook University Renaissance School of Medicine, Stony Brook, New York.
Madhurima SaxenaDepartment of Medical Oncology and Center for Functional Epigenetics, Dana-Farber Cancer Institute, Boston, Massachusetts; Department of Medicine, Harvard Medical School, Boston, Massachusetts.
Kasmika MaharjanDepartment of Medicine, Stony Brook University Renaissance School of Medicine, Stony Brook, New York.
Jane J SongDepartment of Medicine, Stony Brook University Renaissance School of Medicine, Stony Brook, New York.
Kenneth R ShroyerDepartment of Pathology, Stony Brook University Renaissance School of Medicine, Stony Brook, New York.
Agnieszka B BialkowskaDepartment of Medicine, Stony Brook University Renaissance School of Medicine, Stony Brook, New York.
Ramesh A ShivdasaniDepartment of Medical Oncology and Center for Functional Epigenetics, Dana-Farber Cancer Institute, Boston, Massachusetts; Department of Medicine, Harvard Medical School, Boston, Massachusetts.
Vincent W YangDepartment of Medicine, Stony Brook University Renaissance School of Medicine, Stony Brook, New York; Department of Physiology and Biophysics, Stony Brook University Renaissance School of Medicine, Stony Brook, New York. Electronic address: vincent.yang@stonybrookmedicine.edu.
Stony Brook University · USDana-Farber Cancer Institute · USStony Brook School · US

Funding

REGULATION OF INTESTINAL EPITHELIAL CELL PROLIFERATIONR01DK052230 · NIDDK · STATE UNIVERSITY NEW YORK STONY BROOK · PI Vincent W Yang · 1997 to 2026
$8.7M
MECHANISMS OF INTESTINAL TUMORIGENESISR01CA084197 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI YANG, VINCENT W · 2000 to 2020
$7.5M
Transcriptional control of gut epithelial homeostasis and regenerationR01DK081113 · NIDDK · DANA-FARBER CANCER INST · PI SHIVDASANI, RAMESH A · 2009 to 2022
$5.6M
Transcriptional control and enhancer recruitment in mouse and human intestinal secretory differentiationR01DK082889 · NIDDK · DANA-FARBER CANCER INST · PI Ramesh A Shivdasani · 2010 to 2026
$5.2M
CDX2 regulation of anti-repressive enhancers in intestinal epitheliumF32DK115080 · NIDDK · DANA-FARBER CANCER INST · PI SAXENA, MADHURIMA · 2017 to 2019
$145k
NCI NIH HHS R01 CA084197NIDDK NIH HHS F32 DK115080NIDDK NIH HHS R01 DK052230NIDDK NIH HHS R01 DK081113NIDDK NIH HHS R01 DK082889
6 · The paper itself

Abstract

BACKGROUND &

aimsSelf-renewal and multipotent differentiation are cardinal properties of intestinal stem cells (ISCs), mediated in part by WNT and NOTCH signaling. Although these pathways are well characterized, the molecular mechanisms that control the 'stemness' of ISCs are still not well defined. Here, we investigated the role of Krüppel-like factor 5 (KLF5) in regulating ISC functions.

methodsWe performed studies in adult Lgr5

resultsLgr5

conclusionWe conclude that ISC self-renewal, lineage specification, and precursor dedifferentiation require KLF5, by its ability to regulate epigenetic and transcriptional activities of ISC-specific gene sets. These findings have the potential for modulating ISC functions by targeting KLF5 in the intestinal epithelium.

Indexed as

Adult Stem CellsAnimalsCase-Control StudiesCell LineageCells, CulturedCell Self RenewalColitisColorectal NeoplasmsDisease Models, AnimalEnteritisEpigenesis, GeneticFemaleHumansIntestinal MucosaKruppel-Like Transcription FactorsMaleKLF5 protein, humanKlf5 protein, mouseKruppel-Like Transcription FactorsLgr5 protein, mouseReceptors, G-Protein-CoupledEpigenetic RegulationIntestinal Stem CellMultipotent DifferentiationTissue Regeneration

Identifiers

PMID31778829
PMCPMC7078555
OpenAlexW2991164245

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.