Evidence map›Paper›PMID 31777924›Full record

ArticleNucleic acids research2020

A single amino acid switch converts the Sleeping Beauty transposase into an efficient unidirectional excisionase with utility in stem cell reprogramming.

Lisa Kesselring, Csaba Miskey, Cecilia Zuliani, Irma Querques, Vladimir Kapitonov, Andrea Laukó, Anita Fehér, Antonio Palazzo, Tanja Diem, Janna Lustig and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. A novel hyperactive variant of theMolecular therapy. Nucleic acids · 2024
    Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Jumping Ahead withViruses · 2021
    Review
  13. Article
  14. Review
  15. Pharmaceutics · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Lisa KesselringTransposition and Genome Engineering, Division of Medical Biotechnology, Paul Ehrlich Institute, Langen, Germany.
Csaba MiskeyTransposition and Genome Engineering, Division of Medical Biotechnology, Paul Ehrlich Institute, Langen, Germany.
Cecilia ZulianiStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
Irma QuerquesStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
Vladimir KapitonovTransposition and Genome Engineering, Division of Medical Biotechnology, Paul Ehrlich Institute, Langen, Germany.
Andrea LaukóBioTalentum Ltd, Gödöllő, 2100 Gödöllő, Hungary.
Anita FehérBioTalentum Ltd, Gödöllő, 2100 Gödöllő, Hungary.
Antonio PalazzoDepartment of Biology, University of Bari 'Aldo Moro', Italy.
Tanja DiemTransposition and Genome Engineering, Division of Medical Biotechnology, Paul Ehrlich Institute, Langen, Germany.
Janna LustigTransposition and Genome Engineering, Division of Medical Biotechnology, Paul Ehrlich Institute, Langen, Germany.
Attila SebeTransposition and Genome Engineering, Division of Medical Biotechnology, Paul Ehrlich Institute, Langen, Germany.
Yongming WangMobile DNA, Max Delbrück Center for Molecular Medicine, Berlin, Germany.
András DinnyésBioTalentum Ltd, Gödöllő, 2100 Gödöllő, Hungary.
Zsuzsanna IzsvákMobile DNA, Max Delbrück Center for Molecular Medicine, Berlin, Germany.
Orsolya BarabasStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany.
Zoltán IvicsTransposition and Genome Engineering, Division of Medical Biotechnology, Paul Ehrlich Institute, Langen, Germany.
Paul Ehrlich Institut · DEBioTalentum (Hungary) · HUEuropean Molecular Biology Laboratory · DEMax Delbrück Center · DEUniversity of Bari Aldo Moro · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Sleeping Beauty (SB) transposon is an advanced tool for genetic engineering and a useful model to investigate cut-and-paste DNA transposition in vertebrate cells. Here, we identify novel SB transposase mutants that display efficient and canonical excision but practically unmeasurable genomic re-integration. Based on phylogenetic analyses, we establish compensating amino acid replacements that fully rescue the integration defect of these mutants, suggesting epistasis between these amino acid residues. We further show that the transposons excised by the exc+/int- transposase mutants form extrachromosomal circles that cannot undergo a further round of transposition, thereby representing dead-end products of the excision reaction. Finally, we demonstrate the utility of the exc+/int- transposase in cassette removal for the generation of reprogramming factor-free induced pluripotent stem cells. Lack of genomic integration and formation of transposon circles following excision is reminiscent of signal sequence removal during V(D)J recombination, and implies that cut-and-paste DNA transposition can be converted to a unidirectional process by a single amino acid change.

Indexed as

Cellular ReprogrammingDNA Transposable ElementsAmino Acid SubstitutionAnimalsEpistasis, GeneticGenetic EngineeringHeLa CellsHep G2 CellsHumansInduced Pluripotent Stem CellsMiceMutationTransposasesDNA Transposable Elementssleeping beauty transposase, humanTransposases

Identifiers

PMID31777924
PMCPMC6943129
OpenAlexW2990263363

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.