Evidence map›Paper›PMID 31776784›Full record

ArticlePlanta2019

A two-step mutation process in the double WS1 homologs drives the evolution of burley tobacco, a special chlorophyll-deficient mutant with abnormal chloroplast development.

Xinru Wu, Daping Gong, Fei Xia, Changbo Dai, Xingwei Zhang, Xiaoming Gao, Shaomei Wang, Xu Qu, Yuhe Sun, Guanshan Liu

Abstract read
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In one paragraph

Article in Planta, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Fine Mapping and Candidate Gene Analysis ofFrontiers in plant science · 2022
    Article
  4. Plants (Basel, Switzerland) · 2021
    Article
  5. An Argon-Ion-Induced Pale Green Mutant ofPlants (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Xinru WuTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China. wuxinru@caas.cn.
Daping GongTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China.
Fei XiaTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China.
Changbo DaiTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China.
Xingwei ZhangTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China.
Xiaoming GaoTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China.
Shaomei WangTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China.
Xu QuQingdao Tobacco Seed Co., Ltd, Qingdao, 266101, China.
Yuhe SunTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China.
Guanshan LiuTobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, 266101, China. liuguanshan@caas.cn.
Tobacco Research Institute · CNChina Tobacco · CNChinese Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MAIN

conclusionThe functional homologs WS1A and WS1B, identified by map-based cloning, control the burley character by affecting chloroplast development in tobacco, contributing to gene isolation and genetic improvement in polyploid crops. Burley represents a special type of tobacco (Nicotiana tabacum L.) cultivar that is characterized by a white stem with a high degree of chlorophyll deficiency. Although important progress in the research of burley tobacco has been made, the molecular mechanisms underlying this character remain unclear. Here, on the basis of our previous genetic analyses and preliminary mapping results, we isolated the White Stem 1A (WS1A) and WS1B genes using a map-based cloning approach. WS1A and WS1B are functional homologs with completely identical biological functions and highly similar expression patterns that control the burley character in tobacco. WS1A and WS1B are derived from Nicotiana sylvestris and Nicotiana tomentosiformis, the diploid ancestors of Nicotiana tabacum, respectively. The two genes encode zinc metalloproteases of the M50 family that are highly homologous to the Ethylene-dependent Gravitropism-deficient and Yellow-green 1 (EGY1) protein of Arabidopsis and the Lutescent 2 (L2) protein of tomato. Transmission electron microscopic examinations indicated that WS1A and WS1B are involved in the development of chloroplasts by controlling the formation of thylakoid membranes, very similar to that observed for EGY1 and L2. The genotyping of historical tobacco varieties revealed that a two-step mutation process occurred in WS1A and WS1B during the evolution of burley tobacco. We also discussed the strategy for gene map-based cloning in polyploid plants with complex genomes. This study will facilitate the identification of agronomically important genes in tobacco and other polyploid crops and provide insights into crop improvement via molecular approaches.

Indexed as

ChlorophyllChloroplastsNicotianaPlant ProteinsChlorophyllPlant ProteinsBurley tobaccoChloroplastDuplicated genesMap-based cloningPolyploidWhite stem

Identifiers

PMID31776784
OpenAlexW2990476649

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.