Evidence map›Paper›PMID 31775637›Full record

ArticleBMC cardiovascular disorders2019

Identification and functional analysis of genetic variants in TBX5 gene promoter in patients with acute myocardial infarction.

Shuai Wang, Jie Zhang, Xiaohui He, Yexin Zhang, Jing Chen, Qiang Su, Shuchao Pang, Shufang Zhang, Yinghua Cui, Bo Yan

Open access · goldAbstract read
In one paragraph

Article in BMC cardiovascular disorders, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Shuai WangDepartment of Medicine, Shandong University School of Medicine, Jinan, 250012, Shandong, China.
Jie ZhangDepartment of Medicine, Shandong University School of Medicine, Jinan, 250012, Shandong, China.
Xiaohui HeDepartment of Medicine, Shandong University School of Medicine, Jinan, 250012, Shandong, China.
Yexin ZhangDepartment of Medicine, Shandong University School of Medicine, Jinan, 250012, Shandong, China.
Jing ChenDepartment of Medicine, Shandong University School of Medicine, Jinan, 250012, Shandong, China.
Qiang SuDepartment of Medicine, Shandong University School of Medicine, Jinan, 250012, Shandong, China.
Shuchao PangShandong Provincial Key Laboratory of Cardiac Disease Diagnosis and Treatment, Affiliated Hospital of Jining Medical University, Jining Medical University, 89 Guhuai Road, Jining, 272029, Shandong, China.
Shufang ZhangDivision of Cardiology, Affiliated Hospital of Jining Medical University, Jining Medical University, 89 Guhuai Road, Jining, 272029, Shandong, China.
Yinghua CuiDivision of Cardiology, Affiliated Hospital of Jining Medical University, Jining Medical University, 89 Guhuai Road, Jining, 272029, Shandong, China. cuiyinghua@mail.jnmc.edu.cn.
Bo YanShandong Provincial Key Laboratory of Cardiac Disease Diagnosis and Treatment, Affiliated Hospital of Jining Medical University, Jining Medical University, 89 Guhuai Road, Jining, 272029, Shandong, China. yanbo@mail.jnmc.edu.cn.ORCID 0000-0001-5038-9008
Shandong University · CNAffiliated Hospital of Jining Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCoronary artery disease (CAD), including acute myocardial infarction (AMI), is a common complex disease. Although a great number of genetic loci and variants for CAD have been identified, genetic causes and underlying mechanisms remain largely unclear. Epidemiological studies have revealed that CAD incidence is strikingly higher in patients with congenital heart disease than that in normal population. T-box transcription factors play critical roles in embryonic development. In particular, TBX5 as a dosage-sensitive regulator is required for cardiac development and function. Thus, dysregulated TBX5 gene expression may be involved in CAD development.

methodsTBX5 gene promoter was genetically and functionally analysed in large groups of AMI patients (n = 432) and ethnic-matched healthy controls (n = 448).

resultsSix novel heterozygous DNA sequence variants (DSVs) in the TBX5 gene promoter (g.4100A > G, g.4194G > A, g.4260 T > C, g.4367C > A, g.4581A > G and g.5004G > T) were found in AMI patients, but in none of controls. These DSVs significantly changed the activity of TBX5 gene promoter in cultured cells (P < 0.05). Furthermore, three of the DSVs (g.4100A > G, g.4260 T > C and g.4581A > G) evidently modified the binding sites of unknown transcription factors.

conclusionsThe DSVs identified in AMI patients may alter TBX5 gene promoter activity and change TBX5 level, contributing to AMI development as a rare risk factor.

Indexed as

Genetic VariationPromoter Regions, GeneticAnimalsCase-Control StudiesCoronary Artery DiseaseFemaleGenetic Association StudiesGenetic Predisposition to DiseaseHEK293 CellsHeterozygoteHumansMaleMiddle AgedMyocardial InfarctionMyocytes, CardiacPhenotypeT-Box Domain ProteinsT-box transcription factor 5Acute myocardial infarctionGene expression regulationGenetic variantsPromoterTBX5

Identifiers

PMID31775637
PMCPMC6880377
OpenAlexW2990339729

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.