Evidence map›Paper›PMID 31775627›Full record

ArticleBMC molecular and cell biology2019

Detection of 8-oxoguanine and apurinic/apyrimidinic sites using a fluorophore-labeled probe with cell-penetrating ability.

Dong Min Kang, Jong-Il Shin, Ji Beom Kim, Kyungho Lee, Ji Hyung Chung, Hye-Won Yang, Kil-Nam Kim, Ye Sun Han

Open access · goldAbstract read
In one paragraph

Article in BMC molecular and cell biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Dong Min KangDepartment of Advanced Technology Fusion, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea.
Jong-Il ShinDepartment of Biological Sciences, Konkuk University, Seoul, 05029, South Korea.
Ji Beom KimDepartment of Biological Sciences, Konkuk University, Seoul, 05029, South Korea.
Kyungho LeeDepartment of Biological Sciences, Konkuk University, Seoul, 05029, South Korea.
Ji Hyung ChungDepartment of Applied Bioscience, College of Life Science, CHA University, Pocheon, 11160, South Korea.
Hye-Won YangDepartment of Marine Life Science, Jeju National University, Jeju, 63243, South Korea.
Kil-Nam KimChuncheon Center, Korea Basic Science Institute (KBSI), Chuncheon, 24341, South Korea.
Ye Sun HanDepartment of Advanced Technology Fusion, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 05029, Republic of Korea. yshan@konkuk.ac.kr.ORCID 0000-0001-7214-1513
Konkuk University · KRCHA University · KRJeju National University · KRKorea Basic Science Institute · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundReactive oxygen species (ROS) produce different lesions in DNA by ROS-induced DNA damage. Detection and quantification of 8-oxo-7,8-dihydroguanine (8-oxoG) within cells are important for study. Human ribosomal protein S3 (hRpS3) has a high binding affinity to 8-oxoG. In this study, we developed an imaging probe to detect 8-oxoG using a specific peptide from hRpS3. Transactivator (TAT) proteins are known to have cell-penetrating properties. Therefore, we developed a TAT-S3 probe by attaching a TAT peptide to our imaging probe.

resultsA DNA binding assay was conducted to confirm that our probe bound to 8-oxoG and apurinic/apyrimidinic (AP) sites. We confirmed that the TAT-S3 probe localized in the mitochondria, without permeabilization, and fluoresced in H

conclusionsThese results revealed that the TAT-S3 probe successfully detected the presence of 8-oxoG and AP sites in damaged cells. The TAT-S3 probe may have applications for the detection of diseases caused by reactive oxygen species.

Indexed as

Fluorescent DyesAnimalsBinding SitesDNADNA-(Apurinic or Apyrimidinic Site) LyaseDNA DamageDNA, MitochondrialFlow CytometryGuanineHeLa CellsHumansMicroscopy, ConfocalMitochondriaProtein BindingRibosomal ProteinsTrans-Activators8-hydroxyguanineDNADNA-(Apurinic or Apyrimidinic Site) LyaseDNA, MitochondrialFluorescent DyesGuanineRibosomal ProteinsRPS3 protein, humanTrans-Activators8-oxo-7,8-dihydroguanine (8-oxoG)Apurinic/apyrimidinic (AP) siteHuman ribosomal protein S3 (hRpS3)Transactivator (TAT) proteins

Identifiers

PMID31775627
PMCPMC6881995
OpenAlexW2989839021

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.