Evidence map›Paper›PMID 31775615›Full record

ArticleBMC plant biology2019

An isoform of the plastid RNA polymerase-associated protein FSD3 negatively regulates chloroplast development.

Sangyool Lee, Young Hee Joung, Ju-Kon Kim, Yang Do Choi, Geupil Jang

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. QTL mapping and candidate gene analysis reveal two major loci regulating green leaf color in non-heading Chinese cabbage.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Sangyool LeeSchool of Biological Sciences and Technology, Chonnam National University, Gwangju, 61186, Republic of Korea.
Young Hee JoungSchool of Biological Sciences and Technology, Chonnam National University, Gwangju, 61186, Republic of Korea.
Ju-Kon KimGraduate School of International Agricultural Technology and Crop Biotechnology Institute/Green BioScience and Technology, Seoul National University, Pyeongchang, 25354, Republic of Korea.
Yang Do ChoiDepartment of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Geupil JangSchool of Biological Sciences and Technology, Chonnam National University, Gwangju, 61186, Republic of Korea. yk3@jnu.ac.kr.
Chonnam National University · KRNational Academy of Sciences · KRSeoul National University · KR

Funding

National Research Foundation (ROK) NRF-2019R1A2C1007103Rural Development Administration (ROK) PJ01323901Rural Development Administration (ROK) PJ01364301
6 · The paper itself

Abstract

backgroundPlastid-encoded RNA polymerase (PEP) plays an essential role in chloroplast development by governing the expression of genes involved in photosynthesis. At least 12 PEP-associated proteins (PAPs), including FSD3/PAP4, regulate PEP activity and chloroplast development by modulating formation of the PEP complex.

resultsIn this study, we identified FSD3S, a splicing variant of FSD3; the FSD3 and FSD3S transcripts encode proteins with identical N-termini, but different C-termini. Characterization of FSD3 and FSD3S proteins showed that the C-terminal region of FSD3S contains a transmembrane domain, which promotes FSD3S localization to the chloroplast membrane but not to nucleoids, in contrast to FSD3, which localizes to the chloroplast nucleoid. We also found that overexpression of FSD3S negatively affects photosynthetic activity and chloroplast development by reducing expression of genes involved in photosynthesis. In addition, FSD3S failed to complement the chloroplast developmental defects in the fsd3 mutant.

conclusionThese results suggest FSD3 and FSD3S, with their distinct localization patterns, have different functions in chloroplast development, and FSD3S negatively regulates expression of PEP-dependent chloroplast genes, and development of chloroplasts.

Indexed as

Alternative SplicingArabidopsisArabidopsis ProteinsChloroplast ProteinsChloroplastsDNA-Directed RNA PolymerasesMembrane ProteinsPlastidsProtein IsoformsSuperoxide DismutaseArabidopsis ProteinsChloroplast ProteinsDNA-Directed RNA PolymerasesMembrane ProteinsProtein IsoformsSuperoxide DismutaseAlternative splicingChloroplastFSD3FSD3SPEP-associated proteinPlastid-encoded RNA polymerase

Identifiers

PMID31775615
PMCPMC6882211
OpenAlexW2991249254

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.