Evidence map›Paper›PMID 31775054›Full record

ArticleCell reports2019

Trans-omics Impact of Thymoproteasome in Cortical Thymic Epithelial Cells.

Izumi Ohigashi, Yu Tanaka, Kenta Kondo, Sayumi Fujimori, Hiroyuki Kondo, Amy C Palin, Victoria Hoffmann, Mina Kozai, Yosuke Matsushita, Shinsuke Uda and 8 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. The thymoproteasome in shaping the CD8Current opinion in immunology · 2023
    Review
  8. Large-Scale Isolation of Mouse Thymic Epithelial Cells.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Thymus Degeneration and Regeneration.Frontiers in immunology · 2021
    Review
  16. Review
  17. The Role of Proteasomes in the Thymus.Frontiers in immunology · 2021
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 2 countries.

Izumi OhigashiDivision of Experimental Immunology, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima 770-8503, Japan.
Yu TanakaExperimental Immunology Branch, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Kenta KondoExperimental Immunology Branch, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Sayumi FujimoriDivision of Experimental Immunology, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima 770-8503, Japan.
Hiroyuki KondoDivision of Experimental Immunology, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima 770-8503, Japan.
Amy C PalinExperimental Immunology Branch, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
Victoria HoffmannDivision of Veterinary Resources, Office of Research Services, NIH, Bethesda, MD 20892, USA.
Mina KozaiDivision of Experimental Immunology, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima 770-8503, Japan.
Yosuke MatsushitaDivision of Genome Medicine, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima 770-8503, Japan.
Shinsuke UdaDivision of Integrated Omics, Medical Institute of Bioregulation, Kyushu University, Fukuoka 812-8582, Japan.
Ryo MotosugiLaboratory of Protein Metabolism, Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo 113-0033, Japan.
Jun HamazakiLaboratory of Protein Metabolism, Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo 113-0033, Japan.
Hiroyuki KubotaDivision of Integrated Omics, Medical Institute of Bioregulation, Kyushu University, Fukuoka 812-8582, Japan.
Shigeo MurataLaboratory of Protein Metabolism, Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo 113-0033, Japan.
Keiji TanakaTokyo Metropolitan Institute for Medical Science, Tokyo 156-8506, Japan.
Toyomasa KatagiriDivision of Genome Medicine, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima 770-8503, Japan.
Hidetaka KosakoDivision of Cell Signaling, Fujii Memorial Institute of Medical Sciences, Institute of Advanced Medical Sciences, University of Tokushima, Tokushima 770-8503, Japan.
Yousuke TakahamaExperimental Immunology Branch, National Cancer Institute, NIH, Bethesda, MD 20892, USA. Electronic address: yousuke.takahama@nih.gov.
Tokushima University · JPNational Cancer Institute · USThe University of Tokyo · JPKyushu University · JPOffice of Research Services · USTokyo Metropolitan Institute of Medical Science · JP

Funding

Thymus biologyZIABC011806 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI TAKAHAMA, YOUSUKE · 2018 to 2025
$13.5M
Intramural NIH HHS ZIA BC011806
6 · The paper itself

Abstract

The thymic function to produce self-protective and self-tolerant T cells is chiefly mediated by cortical thymic epithelial cells (cTECs) and medullary TECs (mTECs). Recent studies including single-cell transcriptomic analyses have highlighted a rich diversity in functional mTEC subpopulations. Because of their limited cellularity, however, the biochemical characterization of TECs, including the proteomic profiling of cTECs and mTECs, has remained unestablished. Utilizing genetically modified mice that carry enlarged but functional thymuses, here we show a combination of proteomic and transcriptomic profiles for cTECs and mTECs, which identified signature molecules that characterize a developmental and functional contrast between cTECs and mTECs. Our results reveal a highly specific impact of the thymoproteasome on proteasome subunit composition in cTECs and provide an integrated trans-omics platform for further exploration of thymus biology.

Indexed as

Cell DifferentiationEpithelial CellsHumansProteomicsThymus Glandcortical thymic epithelial cellscyclin D1medullary thymic epithelial cellsproteomePsmb11thymoproteasometrans-omics

Identifiers

PMID31775054
PMCPMC6897492
OpenAlexW2991238419

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.