Evidence map›Paper›PMID 31774837›Full record

ArticlePloS one2019

Discovering novel disease comorbidities using electronic medical records.

Shikha Chaganti, Valerie F Welty, Warren Taylor, Kimberly Albert, Michelle D Failla, Carissa Cascio, Seth Smith, Louise Mawn, Susan M Resnick, Lori L Beason-Held and 4 more

Abstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Gender-sensitive word embeddings for healthcare.Journal of the American Medical Informatics Association : JAMIA · 2022
    Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Shikha ChagantiDepartment of Electrical Engineering and Computer Science, Vanderbilt University, Nashville, Tennessee, United States of America.ORCID 0000-0002-7029-2665
Valerie F WeltyDepartment of Biostatistics, Vanderbilt University, Nashville, Tennessee, United States of America.
Warren TaylorDepartment of Psychiatry & Behavioral Sciences, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Kimberly AlbertDepartment of Psychiatry & Behavioral Sciences, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Michelle D FaillaDepartment of Psychiatry & Behavioral Sciences, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.ORCID 0000-0001-9734-3373
Carissa CascioDepartment of Psychiatry & Behavioral Sciences, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Seth SmithDepartment of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Louise MawnDepartment of Ophthalmology and Visual Sciences, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Susan M ResnickLaboratory of Behavioral Neuroscience, National Institute on Aging, Baltimore, Maryland, United States of America.
Lori L Beason-HeldLaboratory of Behavioral Neuroscience, National Institute on Aging, Baltimore, Maryland, United States of America.
Francesca BagnatoDepartment of Neurology, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Thomas LaskoDepartment of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Jeffrey D BlumeDepartment of Biostatistics, Vanderbilt University, Nashville, Tennessee, United States of America.
Bennett A LandmanDepartment of Electrical Engineering and Computer Science, Vanderbilt University, Nashville, Tennessee, United States of America.

Funding

VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
LIFE-SPAN DEVELOPMENT OF NORMAL AND ABNORMAL BEHAVIORT32MH018921 · NIMH · VANDERBILT UNIVERSITY · PI HUMPHREYS, KATHRYN LEIGH · 1989 to 2024
$6.7M
NRSA Training CoreTL1TR002244 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Julie A. Bastarache · 2017 to 2026
$4.6M
Sensorimotor integration governing facial expression production in autism.R01MH102272 · NIMH · VANDERBILT UNIVERSITY MEDICAL CENTER · PI CASCIO, CARISSA J · 2014 to 2023
$4.3M
Training Program for Innovative Engineering Research in Surgery and InterventionT32EB021937 · NIBIB · VANDERBILT UNIVERSITY · PI Dario J Englot, Michael Ian Miga · 2016 to 2026
$2.3M
Mentoring and Research on Neurobiological Markers of Clinical Outcomes in DepressionK24MH110598 · NIMH · VANDERBILT UNIVERSITY MEDICAL CENTER · PI TAYLOR, WARREN D · 2016 to 2019
$637k
Quantitative Image Analysis Techniques for Optic Nerve DiseaseR21EY024036 · NEI · VANDERBILT UNIVERSITY · PI LANDMAN, BENNETT A. · 2014 to 2015
$410k
NCATS NIH HHS TL1 TR002244NCATS NIH HHS UL1 TR000445NCRR NIH HHS UL1 RR024975NEI NIH HHS R21 EY024036NIBIB NIH HHS T32 EB021937NIMH NIH HHS K24 MH110598NIMH NIH HHS R01 MH102272NIMH NIH HHS T32 MH018921
6 · The paper itself

Abstract

Increasing reliance on electronic medical records at large medical centers provides unique opportunities to perform population level analyses exploring disease progression and etiology. The massive accumulation of diagnostic, procedure, and laboratory codes in one place has enabled the exploration of co-occurring conditions, their risk factors, and potential prognostic factors. While most of the readily identifiable associations in medical records are (now) well known to the scientific community, there is no doubt many more relationships are still to be uncovered in EMR data. In this paper, we introduce a novel finding index to help with that task. This new index uses data mined from real-time PubMed abstracts to indicate the extent to which empirically discovered associations are already known (i.e., present in the scientific literature). Our methods leverage second-generation p-values, which better identify associations that are truly clinically meaningful. We illustrate our new method with three examples: Autism Spectrum Disorder, Alzheimer's Disease, and Optic Neuritis. Our results demonstrate wide utility for identifying new associations in EMR data that have the highest priority among the complex web of correlations and causalities. Data scientists and clinicians can work together more effectively to discover novel associations that are both empirically reliable and clinically understudied.

Indexed as

Alzheimer DiseaseAutism Spectrum DisorderComorbidityDatasets as TopicElectronic Health RecordsHumansOptic Neuritis

Identifiers

PMID31774837
PMCPMC6880990

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.