Evidence map›Paper›PMID 31774399›Full record

ArticleeLife2019

Helix breaking transition in the S4 of HCN channel is critical for hyperpolarization-dependent gating.

Marina A Kasimova, Debanjan Tewari, John B Cowgill, Willy Carrasquel Ursuleaz, Jenna L Lin, Lucie Delemotte, Baron Chanda

Abstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Review
  2. Extracellular salt bridge networks around S4 implicated in HCN channel gating and heart disease.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
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  11. Article
  12. Article
  13. Fifty years of gating currents and channel gating.The Journal of general physiology · 2023
    Review
  14. Article
  15. Molecular dynamics study of ClCellular and molecular life sciences : CMLS · 2023
    Article
  16. Article
  17. Article
  18. Mechanism of voltage gating in the voltage-sensing phosphatase Ci-VSP.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  19. Mechanism of voltage sensing in CaProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Marina A Kasimova *Science for Life Laboratory, Department of Applied Physics, KTH Royal Institute of Technology, Stockholm, Sweden.ORCID 0000-0002-7497-9448
Debanjan Tewari *Department of Neuroscience, University of Wisconsin-Madison, Madison, United States.
John B Cowgill *Department of Neuroscience, University of Wisconsin-Madison, Madison, United States.ORCID 0000-0002-7968-8359
Willy Carrasquel UrsuleazDepartment of Neuroscience, University of Wisconsin-Madison, Madison, United States.
Jenna L LinDepartment of Neuroscience, University of Wisconsin-Madison, Madison, United States.
Lucie DelemotteScience for Life Laboratory, Department of Applied Physics, KTH Royal Institute of Technology, Stockholm, Sweden.ORCID 0000-0002-0828-3899
Baron ChandaDepartment of Neuroscience, University of Wisconsin-Madison, Madison, United States.ORCID 0000-0003-4954-7034

Funding

Training Program in Translational Cardiovascular Science (TPTCS)T32HL007936 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI Lee Lochbaum Eckhardt, Gail A Robertson · 2001 to 2026
$11.6M
PREDOCTORAL TRAINING IN MOLECULAR BIOPHYSICST32GM008293 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI JACKSON, MEYER B. · 1989 to 2016
$4.6M
Breakthrough Molecular Dynamics Research via an Anton2 SupercomputerR01GM116961 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI BLOOD, PHILIP D. · 2016 to 2023
$3.0M
Mechanisms of voltage- and ligand-activation in HCN channelsR01NS101723 · NINDS · WASHINGTON UNIVERSITY · PI CHANDA, BARON · 2017 to 2020
$2.0M
NHLBI NIH HHS HL-07936-18NHLBI NIH HHS T32 HL007936NIGMS NIH HHS GM008293NIGMS NIH HHS R01 GM116961NIGMS NIH HHS T32 GM008293NINDS NIH HHS NS101723NINDS NIH HHS R01 NS101723
6 · The paper itself

Abstract

In contrast to most voltage-gated ion channels, hyperpolarization- and cAMP gated (HCN) ion channels open on hyperpolarization. Structure-function studies show that the voltage-sensor of HCN channels are unique but the mechanisms that determine gating polarity remain poorly understood. All-atom molecular dynamics simulations (~20 μs) of HCN1 channel under hyperpolarization reveals an initial downward movement of the S4 voltage-sensor but following the transfer of last gating charge, the S4 breaks into two sub-helices with the lower sub-helix becoming parallel to the membrane. Functional studies on bipolar channels show that the gating polarity strongly correlates with helical turn propensity of the substituents at the breakpoint. Remarkably, in a proto-HCN background, the replacement of breakpoint serine with a bulky hydrophobic amino acid is sufficient to completely flip the gating polarity from inward to outward-rectifying. Our studies reveal an unexpected mechanism of inward rectification involving a linker sub-helix emerging from HCN S4 during hyperpolarization.

Indexed as

Allosteric RegulationHumansHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsModels, MolecularMolecular Dynamics SimulationPotassium ChannelsProtein ConformationHCN1 protein, humanHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsPotassium Channelsinward rectificationion channelsmolecular biophysicsnoneoutward rectificationstructural biology

Identifiers

PMID31774399
PMCPMC6904216

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.