Evidence map›Paper›PMID 31772075›Full record

ArticleCold Spring Harbor protocols2020

Transcriptomics and Proteomics Methods for

Michael J Gilchrist, Gert Jan C Veenstra, Ken W Y Cho

Abstract read
In one paragraph

Article in Cold Spring Harbor protocols, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Current issues in molecular biology · 2026
    Review
  2. Transcriptome and MicroRNA Analysis ofInternational journal of molecular sciences · 2025
    Article
  3. Article
  4. Article
  5. Genomics Methods forCold Spring Harbor protocols · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Michael J GilchristThe Francis Crick Institute, London NW1 1AT, United Kingdom; drmikegilchrist@gmail.com g.veenstra@science.ru.nl kwcho@uci.edu.ORCID 0000-0001-9762-1951
Gert Jan C VeenstraThe Francis Crick Institute, London NW1 1AT, United Kingdom; drmikegilchrist@gmail.com g.veenstra@science.ru.nl kwcho@uci.edu.ORCID 0000-0002-7787-4940
Ken W Y ChoDepartment of Developmental and Cell Biology, School of Biological Sciences, University of California, Irvine, California 92697 drmikegilchrist@gmail.com g.veenstra@science.ru.nl kwcho@uci.edu.ORCID 0000-0003-4816-6985

Funding

Zygotic Genome Activation by Maternal Transcription Factors and Epigenetic ModifiersR35GM139617 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI Ken W.Y. Cho · 2021 to 2026
$2.6M
Mechanisms of Foxh1 pioneer factor action during mesendoderm developmentR01GM126395 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI CHO, KEN W.Y. · 2017 to 2020
$1.6M
NIGMS NIH HHS R01 GM126395NIGMS NIH HHS R35 GM139617
6 · The paper itself

Abstract

The general field of quantitative biology has advanced significantly on the back of recent improvements in both sequencing technology and proteomics methods. The development of high-throughput, short-read sequencing has revolutionized RNA-based expression studies, while improvements in proteomics methods have enabled quantitative studies to attain better resolution. Here we introduce methods to undertake global analyses of gene expression through RNA and protein quantification in

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsChromatography, LiquidEmbryo, NonmammalianGene Expression ProfilingProteomeProteomicsSequence Analysis, RNATandem Mass SpectrometryXenopus laevisXenopus ProteinsProteomeXenopus Proteins

Identifiers

PMID31772075
PMCPMC7362671

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.