Evidence map›Paper›PMID 31771980›Full record

ArticleThe Journal of biological chemistry2020

NMR-based site-resolved profiling of β-amyloid misfolding reveals structural transitions from pathologically relevant spherical oligomer to fibril.

Yiling Xiao, Isamu Matsuda, Masafumi Inoue, Tomoya Sasahara, Minako Hoshi, Yoshitaka Ishii

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

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  11. Oligomerization by co-assembly of β-amyloid and α-synuclein.Frontiers in molecular biosciences · 2023
    Review
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yiling XiaoDepartment of Chemistry, University of Illinois, Chicago, Illinois 60607.
Isamu MatsudaDepartment of Chemistry, University of Illinois, Chicago, Illinois 60607; School of Life Science and Technology, Tokyo Institute of Technology, 4259 Midori-ku, Yokohama, Kanagawa 226-8503, Japan.
Masafumi InoueTAO Health Life Pharma Co. Ltd., Med-Pharma Collaboration Building, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan; Department of System Pathology for Neurological Disorders, Center for Bioresources, Brain Research Institute, Niigata University, 1-757 Asahimachidori, Chuo-ku, Niigata 951-8585, Japan.
Tomoya SasaharaTAO Health Life Pharma Co. Ltd., Med-Pharma Collaboration Building, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan; Department for Brain and Neurodegenerative Disease Research, Institute of Biomedical Research and Innovation, Foundation for Biomedical Research and Innovation at Kobe, Hyogo 650-0047, Japan.
Minako HoshiDepartment for Brain and Neurodegenerative Disease Research, Institute of Biomedical Research and Innovation, Foundation for Biomedical Research and Innovation at Kobe, Hyogo 650-0047, Japan; Department of Anatomy and Developmental Biology, Graduate School of Medicine, Kyoto University, Kyoto 606-8501, Japan.
Yoshitaka IshiiDepartment of Chemistry, University of Illinois, Chicago, Illinois 60607; School of Life Science and Technology, Tokyo Institute of Technology, 4259 Midori-ku, Yokohama, Kanagawa 226-8503, Japan; NMR Science and Development Division, RIKEN SPring-8 Center (RSC), RIKEN, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan. Electronic address: ishii@bio.titech.ac.jp.

Funding

Structures and Propagation of Pathologically Relevant Amyloids in Alzheimer's.U01GM098033 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI ISHII, YOSHITAKA · 2016 to 2020
$1.3M
Structures and Toxicity of Amyloid Protein Assemblies in Alzheimer'sR01GM098033 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI ISHII, YOSHITAKA · 2011 to 2014
$1.1M
NIGMS NIH HHS R01 GM098033NIGMS NIH HHS U01 GM098033
6 · The paper itself

Abstract

Increasing evidence highlights the central role of neurotoxic oligomers of the 42-residue-long β-amyloid (Aβ42) in Alzheimer's disease (AD). However, very limited information is available on the structural transition from oligomer to fibril, particularly for pathologically relevant amyloids. To the best of our knowledge, we present here the first site-specific structural characterization of Aβ42 misfolding, from toxic oligomeric assembly yielding a similar conformation to an AD-associated Aβ42 oligomer, into a fibril. Transmission EM (TEM) analysis revealed that a spherical amyloid assembly (SPA) of Aβ42 with a 15.6 ± 2.1-nm diameter forms in a ∼30-μm Aβ42 solution after a ∼10-h incubation at 4 °C, followed by a slow conversion into fibril at ∼180 h. Immunological analysis suggested that the SPA has a surface structure similar to that of amylospheroid (ASPD), a patient-derived toxic Aβ oligomer, which had a diameter of 10-15 nm in negative-stain TEM. Solid-state NMR analyses indicated that the SPA structure involves a β-loop-β motif, which significantly differed from the triple-β motif observed for the Aβ42 fibril. The comparison of the

Indexed as

Alzheimer DiseaseAmyloidAmyloid beta-PeptidesHumansNuclear Magnetic Resonance, BiomolecularPeptide FragmentsProtein FoldingProtein Structure, SecondaryAmyloidAmyloid beta-Peptidesamyloid beta-protein (1-42)Peptide FragmentsAbeta42Alzheimer diseaseamyloidamyloid-beta (AB)amylospheroid (ASPD)fibrillizationneurodegenerationneurotoxic proteinoligomerprotein aggregationprotein misfoldingsolid state NMRspherical amyloid assembly (SPA)structural biology

Identifiers

PMID31771980
PMCPMC6956526

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.